Publications
2014
Wang, Y., Y. Wang, D. Li, L. Li, W. Zhang, G. Yao, Z. Jiang, and W. Zheng, "IMP3 signatures of fallopian tube: a risk for pelvic serous cancers.", J Hematol Oncol, vol. 7, pp. 49, 2014 Jul 12.
PMCID: PMC4230642 PMID: 25014991
Aldrich, J. C., and K. A. Maggert, "Simple quantitative PCR approach to reveal naturally occurring and mutation-induced repetitive sequence variation on the Drosophila Y chromosome.", PLoS One, vol. 9, issue 10, pp. e109906, 2014.
PMCID: PMC4186871 PMID: 25285439
Veeramah, K. R., R. N. Gutenkunst, A. E. Woerner, J. C. Watkins, and M. F. Hammer, "Evidence for increased levels of positive and negative selection on the X chromosome versus autosomes in humans.", Mol Biol Evol, vol. 31, issue 9, pp. 2267-82, 2014 Sep.
PMCID: PMC4137703 PMID: 24830675
Zheng, X., L. Jiang, J. Schroeder, A. Stopeck, and Y. Zohar, "Isolation of viable cancer cells in antibody-functionalized microfluidic devices.", Biomicrofluidics, vol. 8, issue 2, pp. 024119, 2014 Mar.
PMCID: PMC4008759 PMID: 24803968
Buchan, J.R., "mRNP granules. Assembly, function, and connections with disease.", RNA Biol, vol. 11, issue 8, pp. 1019-30, 2014.
PMCID: PMC4615263 PMID: 25531407
Yao, G., "Modelling mammalian cellular quiescence.", Interface Focus, vol. 4, issue 3, pp. 20130074, 2014 Jun 06.
PMCID: PMC3996586 PMID: 24904737
Mondal, D., E. Dougherty, A. Mukhopadhyay, A. Carbo, G. Yao, and J. Xing, "Systematic reverse engineering of network topologies: a case study of resettable bistable cellular responses.", PLoS One, vol. 9, issue 8, pp. e105833, 2014.
PMCID: PMC4149494 PMID: 25170839
Sutphin, G. L., J. R. Delaney, and M. Kaeberlein, "Replicative life span analysis in budding yeast.", Methods Mol Biol, vol. 1205, pp. 341-57, 2014.
PMID: 25213254
Holmes, W. M., B. K. Mannakee, R. N. Gutenkunst, and T. R. Serio, "Loss of amino-terminal acetylation suppresses a prion phenotype by modulating global protein folding.", Nat Commun, vol. 5, pp. 4383, 2014 Jul 15.
PMCID: PMC4140192 PMID: 25023910
Srimani, J. K., G. Yao, J. Neu, Y. Tanouchi, T. Jun Lee, and L. You, "Linear population allocation by bistable switches in response to transient stimulation.", PLoS One, vol. 9, issue 8, pp. e105408, 2014.
PMCID: PMC4139379 PMID: 25141235
Dang, W., G. L. Sutphin, J. A. Dorsey, G. L. Otte, K. Cao, R. M. Perry, J. J. Wanat, D. Saviolaki, C. J. Murakami, S. Tsuchiyama, et al., "Inactivation of yeast Isw2 chromatin remodeling enzyme mimics longevity effect of calorie restriction via induction of genotoxic stress response.", Cell Metab, vol. 19, issue 6, pp. 952-66, 2014 Jun 03.
PMCID: PMC4106248 PMID: 24814484
Jilkine, A., and R. N. Gutenkunst, "Effect of dedifferentiation on time to mutation acquisition in stem cell-driven cancers.", PLoS Comput Biol, vol. 10, issue 3, pp. e1003481, 2014 Mar.
PMCID: PMC3945168 PMID: 24603301
Robinson, J. D., A. J. Coffman, M. J. Hickerson, and R. N. Gutenkunst, "Sampling strategies for frequency spectrum-based population genomic inference.", BMC Evol Biol, vol. 14, pp. 254, 2014 Dec 04.
PMCID: PMC4269862 PMID: 25471595
2013
Ma, X., J. L. Kelley, K. Eilertson, S. Musharoff, J. D. Degenhardt, A. L. Martins, T. Vinar, C. Kosiol, A. Siepel, R. N. Gutenkunst, et al., "Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii).", PLoS One, vol. 8, issue 10, pp. e77175, 2013.
PMCID: PMC3806739 PMID: 24194868
Schleit, J., S. C. Johnson, C. F. Bennett, M. Simko, N. Trongtham, A. Castanza, E. J. Hsieh, R. M. Moller, B. M. Wasko, J. R. Delaney, et al., "Molecular mechanisms underlying genotype-dependent responses to dietary restriction.", Aging Cell, vol. 12, issue 6, pp. 1050-61, 2013 Dec.
PMCID: PMC3838465 PMID: 23837470
Delaney, J. R., U. Ahmed, A. Chou, S. Sim, D. Carr, C. J. Murakami, J. Schleit, G. L. Sutphin, E. H. An, A. Castanza, et al., "Stress profiling of longevity mutants identifies Afg3 as a mitochondrial determinant of cytoplasmic mRNA translation and aging.", Aging Cell, vol. 12, issue 1, pp. 156-66, 2013 Feb.
PMCID: PMC3687586 PMID: 23167605
Horton, N. C., S. O. Mathew, and P. A. Mathew, "Novel interaction between proliferating cell nuclear antigen and HLA I on the surface of tumor cells inhibits NK cell function through NKp44.", PLoS One, vol. 8, issue 3, pp. e59552, 2013.
PMCID: PMC3602199 PMID: 23527218
Smith, A. M., F. R. Adler, R. M. Ribeiro, R. N. Gutenkunst, J. L. McAuley, J. A. McCullers, and A. S. Perelson, "Kinetics of coinfection with influenza A virus and Streptococcus pneumoniae.", PLoS Pathog, vol. 9, issue 3, pp. e1003238, 2013 Mar.
PMCID: PMC3605146 PMID: 23555251
Kim, J. R., N. C. Horton, S. O. Mathew, and P. A. Mathew, "CS1 (SLAMF7) inhibits production of proinflammatory cytokines by activated monocytes.", Inflamm Res, vol. 62, issue 8, pp. 765-72, 2013 Aug.
PMID: 23695528
Delaney, J. R., A. Chou, B. Olsen, D. Carr, C. Murakami, U. Ahmed, S. Sim, E. H. An, A. S. Castanza, M. Fletcher, et al., "End-of-life cell cycle arrest contributes to stochasticity of yeast replicative aging.", FEMS Yeast Res, vol. 13, issue 3, pp. 267-76, 2013 May.
PMCID: PMC3960949 PMID: 23336757
Hart, M. R., H-Y. Su, D. Broka, A. Goverdhan, and J. A. Schroeder, "Inactive ERBB receptors cooperate with reactive oxygen species to suppress cancer progression.", Mol Ther, vol. 21, issue 11, pp. 1996-2007, 2013 Nov.
PMCID: PMC3831044 PMID: 24081029
Ma, X., S. Shah, M. Zhou, C. K. Park, V. H. Wysocki, and N. C. Horton, "Structural analysis of activated SgrAI-DNA oligomers using ion mobility mass spectrometry.", Biochemistry, vol. 52, issue 25, pp. 4373-81, 2013 Jun 25.
PMCID: PMC6402485 PMID: 23742104
Buchan, J.R., R-M. Kolaitis, P. J Taylor, and R. Parker, "Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function.", Cell, vol. 153, issue 7, pp. 1461-74, 2013 Jun 20.
PMCID: PMC3760148 PMID: 23791177
Chen, C., J. Li, G. Yao, S. K. Chambers, and W. Zheng, "Tubal origin of ovarian low-grade serous carcinoma.", Am J Clin Exp Obstet Gynecol, vol. 1, issue 1, pp. 13-36, 2013 Dec 15.
PMCID: PMC4205570 PMID: 25346935
Delaney, J. R., C. Murakami, A. Chou, D. Carr, J. Schleit, G. L. Sutphin, E. H. An, A. S. Castanza, M. Fletcher, S. Goswami, et al., "Dietary restriction and mitochondrial function link replicative and chronological aging in Saccharomyces cerevisiae.", Exp Gerontol, vol. 48, issue 10, pp. 1006-13, 2013 Oct.
PMCID: PMC3604125 PMID: 23235143