Publications

2009

Buchan, J.R., and R. Parker, "Eukaryotic stress granules: the ins and outs of translation.", Mol Cell, vol. 36, issue 6, pp. 932-41, 2009 Dec 25. PMCID: PMC2813218  PMID: 20064460
Auton, A., K. Bryc, A. R. Boyko, K. E. Lohmueller, J. Novembre, A. Reynolds, A. Indap, M. H. Wright, J. D. Degenhardt, R. N. Gutenkunst, et al., "Global distribution of genomic diversity underscores rich complex history of continental human populations.", Genome Res, vol. 19, issue 5, pp. 795-803, 2009 May. PMCID: PMC2675968  PMID: 19218534
Dunten, P. W., E. J. Little, and N. C. Horton, "The restriction enzyme SgrAI: structure solution via combination of poor MIRAS and MR phases.", Acta Crystallogr D Biol Crystallogr, vol. 65, issue Pt 4, pp. 393-8, 2009 Apr. PMCID: PMC2659886  PMID: 19307723

2008

Buchan, J.R., D. Muhlrad, and R. Parker, "P bodies promote stress granule assembly in Saccharomyces cerevisiae.", J Cell Biol, vol. 183, issue 3, pp. 441-55, 2008 Nov 03. PMCID: PMC2575786  PMID: 18981231
Sutphin, G. L., and M. Kaeberlein, "Dietary restriction by bacterial deprivation increases life span in wild-derived nematodes.", Exp Gerontol, vol. 43, issue 3, pp. 130-5, 2008 Mar. PMID: 18083317
Lee, T., G. Yao, J. Nevins, and L. You, "Sensing and integration of Erk and PI3K signals by Myc.", PLoS Comput Biol, vol. 4, issue 2, pp. e1000013, 2008 Feb 29. PMCID: PMC2265471  PMID: 18463697
Casey, F. P., J. J. Waterfall, R. N. Gutenkunst, C. R. Myers, and J. P. Sethna, "Variational method for estimating the rate of convergence of Markov-chain Monte Carlo algorithms.", Phys Rev E Stat Nonlin Soft Matter Phys, vol. 78, issue 4 Pt 2, pp. 046704, 2008 Oct. PMID: 18999558
Babic, A. C., E. J. Little, V. M. Manohar, J. Bitinaite, and N. C. Horton, "DNA distortion and specificity in a sequence-specific endonuclease.", J Mol Biol, vol. 383, issue 1, pp. 186-204, 2008 Oct 31. PMCID: PMC2605692  PMID: 18762194
Bolger, T. A., A. W. Folkmann, E. J. Tran, and S. R. Wente, "The mRNA export factor Gle1 and inositol hexakisphosphate regulate distinct stages of translation.", Cell, vol. 134, issue 4, pp. 624-33, 2008 Aug 22. PMCID: PMC2601711  PMID: 18724935
Steinkraus, K. A., E. D. Smith, C. Davis, D. Carr, W. R. Pendergrass, G. L. Sutphin, B. K. Kennedy, and M. Kaeberlein, "Dietary restriction suppresses proteotoxicity and enhances longevity by an hsf-1-dependent mechanism in Caenorhabditis elegans.", Aging Cell, vol. 7, issue 3, pp. 394-404, 2008 Jun. PMCID: PMC2709959  PMID: 18331616
Daniels, B. C., Y-J. Chen, J. P. Sethna, R. N. Gutenkunst, and C. R. Myers, "Sloppiness, robustness, and evolvability in systems biology.", Curr Opin Biotechnol, vol. 19, issue 4, pp. 389-95, 2008 Aug. PMID: 18620054
Mori, S., R. E. Rempel, J. T. Chang, G. Yao, A. S. Lagoo, A. Potti, A. Bild, and J. R. Nevins, "Utilization of pathway signatures to reveal distinct types of B lymphoma in the Emicro-myc model and human diffuse large B-cell lymphoma.", Cancer Res, vol. 68, issue 20, pp. 8525-34, 2008 Oct 15. PMCID: PMC3617051  PMID: 18922927
Yao, G., T. Jun Lee, S. Mori, J. R. Nevins, and L. You, "A bistable Rb-E2F switch underlies the restriction point.", Nat Cell Biol, vol. 10, issue 4, pp. 476-82, 2008 Apr. PMID: 18364697
Dunten, P. W., E. J. Little, M. T. Gregory, V. M. Manohar, M. Dalton, D. Hough, J. Bitinaite, and N. C. Horton, "The structure of SgrAI bound to DNA; recognition of an 8 base pair target.", Nucleic Acids Res, vol. 36, issue 16, pp. 5405-16, 2008 Sep. PMCID: PMC2532715  PMID: 18701646

2007

Gutenkunst, R. N., J. J. Waterfall, F. P. Casey, K. S. Brown, C. R. Myers, and J. P. Sethna, "Universally sloppy parameter sensitivities in systems biology models.", PLoS Comput Biol, vol. 3, issue 10, pp. 1871-78, 2007 Oct. PMCID: PMC2000971  PMID: 17922568
Buchan, J.R., and R. Parker, "Molecular biology. The two faces of miRNA.", Science, vol. 318, issue 5858, pp. 1877-8, 2007 Dec 21. PMID: 18096794
Casey, F. P., D. Baird, Q. Feng, R. N. Gutenkunst, J. J. Waterfall, C. R. Myers, K. S. Brown, R. A. Cerione, and J. P. Sethna, "Optimal experimental design in an epidermal growth factor receptor signalling and down-regulation model.", IET Syst Biol, vol. 1, issue 3, pp. 190-202, 2007 May. PMID: 17591178
Buchan, J.R., and I. Stansfield, "Halting a cellular production line: responses to ribosomal pausing during translation.", Biol Cell, vol. 99, issue 9, pp. 475-87, 2007 Sep. PMID: 17696878
Tran, E. J., T. A. Bolger, and S. R. Wente, "SnapShot: nuclear transport.", Cell, vol. 131, issue 2, pp. 420, 2007 Oct 19. PMID: 17956740
Pochampalli, M. R., B. G. Bitler, and J. A. Schroeder, "Transforming growth factor alpha dependent cancer progression is modulated by Muc1.", Cancer Res, vol. 67, issue 14, pp. 6591-8, 2007 Jul 15. PMID: 17638868
Gutenkunst, R., N. Newlands, M. Lutcavage, and L. Edelstein-Keshet, "Inferring resource distributions from Atlantic bluefin tuna movements: an analysis based on net displacement and length of track.", J Theor Biol, vol. 245, issue 2, pp. 243-57, 2007 Mar 21. PMID: 17140603
Gutenkunst, R. N., F. P. Casey, J. J. Waterfall, C. R. Myers, and J. P. Sethna, "Extracting falsifiable predictions from sloppy models.", Ann N Y Acad Sci, vol. 1115, pp. 203-11, 2007 Dec. PMID: 17925353
Bolger, T. A., X. Zhao, T. J. Cohen, C-C. Tsai, and T-P. Yao, "The neurodegenerative disease protein ataxin-1 antagonizes the neuronal survival function of myocyte enhancer factor-2.", J Biol Chem, vol. 282, issue 40, pp. 29186-92, 2007 Oct 05. PMID: 17646162
Pochampalli, M. R., R. M. el Bejjani, and J. A. Schroeder, "MUC1 is a novel regulator of ErbB1 receptor trafficking.", Oncogene, vol. 26, issue 12, pp. 1693-701, 2007 Mar 15. PMID: 16983337

2006

Waterfall, J. J., F. P. Casey, R. N. Gutenkunst, K. S. Brown, C. R. Myers, P. W. Brouwer, V. Elser, and J. P. Sethna, "Sloppy-model universality class and the Vandermonde matrix.", Phys Rev Lett, vol. 97, issue 15, pp. 150601, 2006 Oct 13. PMID: 17155311

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