Publications

2021

Bakkar, N., A. Starr, B. E. Rabichow, I. Lorenzini, Z. T. McEachin, R. Kraft, M. Chaung, S. Macklin-Isquierdo, T. Wingfield, B. Carhart, et al., "The M1311V variant of ATP7A is associated with impaired trafficking and copper homeostasis in models of motor neuron disease.", Neurobiol Dis, vol. 149, pp. 105228, 2021 Feb. PMID: 33359139
Brown, N. P., A. M. Vergara, A. B. Whelan, P. Guerra, and T. A. Bolger, "Medulloblastoma-associated mutations in the DEAD-box RNA helicase DDX3X/DED1 cause specific defects in translation.", J Biol Chem, pp. 100296, 2021 Jan 15. PMID: 33460649
Lehmkuhl, E. M., S. Loganathan, E. Alsop, A. D. Blythe, T. Kovalik, N. P. Mortimore, D. Barrameda, C. Kueth, R. J. Eck, B. B. Siddegowda, et al., "TDP-43 proteinopathy alters the ribosome association of multiple mRNAs including the glypican Dally-like protein (Dlp)/GPC6.", Acta Neuropathol Commun, vol. 9, issue 1, pp. 52, 2021 03 24. PMCID: PMC7992842  PMID: 33762006
Pietikäinen, L. P., T. M Rahman, K. J Hiltunen, C. L. Dieckmann, and A. J. Kastaniotis, "Genetic dissection of the mitochondrial lipoylation pathway in yeast.", BMC Biol, vol. 19, issue 1, pp. 14, 2021 Jan 25. PMCID: PMC7831266  PMID: 33487163
Gutenkunst, R. N., "dadi.CUDA: Accelerating Population Genetics Inference with Graphics Processing Units.", Mol Biol Evol, 2021 Jan 22. PMID: 33480999
Bearss, J. J., S. Kr Padi, N. Singh, M. Cardo-Vila, J. H. Song, G. Mouneimne, N. Fernandes, Y. Li, M. R. Harter, J. Mc Gard, et al., "EDC3 phosphorylation regulates growth and invasion through controlling P-body formation and dynamics.", EMBO Rep, pp. e50835, 2021 Feb 15. PMID: 33586867
Adam, Z. R., A. C. Fahrenbach, S. M. Jacobson, B. Kacar, and D. Yu Zubarev, "Radiolysis generates a complex organosynthetic chemical network.", Sci Rep, vol. 11, issue 1, pp. 1743, 2021 Jan 18. PMCID: PMC7813863  PMID: 33462313
Garcia, A. K., C. M. Cavanaugh, and B. Kacar, "The curious consistency of carbon biosignatures over billions of years of Earth-life coevolution.", ISME J, 2021 Apr 12. PMID: 33846565
Goldman, A. D., and B. Kacar, "Cofactors are Remnants of Life's Origin and Early Evolution.", J Mol Evol, 2021 Feb 06. PMID: 33547911
De Tarafder, A., N. Prasad Parajuli, S. Majumdar, B. Kacar, and S. Sanyal, "Kinetic Analysis Suggests Evolution of Ribosome Specificity in Modern Elongation Factor-Tus from 'Generalist' Ancestors.", Mol Biol Evol, 2021 Apr 19. PMID: 33871630
Carruthers, B. M., A. K. Garcia, A. Rivier, and B. Kacar, "Automated Laboratory Growth Assessment and Maintenance of Azotobacter vinelandii.", Curr Protoc, vol. 1, issue 3, pp. e57, 2021 Mar. PMID: 33656286
Bock, N. A., S. Charvet, J. Burns, Y. Gyaltshen, A. Rozenberg, S. Duhamel, and E. Kim, "Experimental identification and in silico prediction of bacterivory in green algae.", ISME J, 2021 Mar 02. PMID: 33649548

2020

Kim, H., X. Jin, D. S. Glass, and I. H. Riedel-Kruse, "Engineering and modeling of multicellular morphologies and patterns.", Curr Opin Genet Dev, vol. 63, pp. 95-102, 2020 Aug. PMID: 32629326
Eshleman, N., X. Luo, A. Capaldi, and R. J Buchan, "Alterations of signaling pathways in response to chemical perturbations used to measure mRNA decay rates in yeast.", RNA, vol. 26, issue 1, pp. 10-18, 2020 01. PMCID: PMC6913126  PMID: 31601735
Mannakee, B. K., and R. N. Gutenkunst, "BATCAVE: calling somatic mutations with a tumor- and site-specific prior.", NAR Genom Bioinform, vol. 2, issue 1, pp. lqaa004, 2020 Mar. PMCID: PMC7003682  PMID: 32051931
Adrion, J. R., C. B. Cole, N. Dukler, J. G. Galloway, A. L. Gladstein, G. Gower, C. C. Kyriazis, A. P. Ragsdale, G. Tsambos, F. Baumdicker, et al., "A community-maintained standard library of population genetic models.", Elife, vol. 9, 2020 06 23. PMCID: PMC7438115  PMID: 32573438
Kacar, B., A. K. Garcia, and A. D. Anbar, "Evolutionary History of Bioessential Elements Can Guide the Search for Life in the Universe.", Chembiochem, 2020 Nov 02. PMID: 33136319
Lam, A. T., J. Griffin, M. Austin Loeun, N. J. Cira, S. Ah Lee, and I. H. Riedel-Kruse, "Pac-Euglena: A Living Cellular Pac-Man Meets Virtual Ghosts", CHI: Conference on Human Factors in Computing Systems, vol. April 2020, 04/2020.
Langston, R. E., D. Palazzola, E. Bonnell, R. J. Wellinger, and T. Weinert, "Loss of Cdc13 causes genome instability by a deficiency in replication-dependent telomere capping.", PLoS Genet, vol. 16, issue 4, pp. e1008733, 2020 04. PMCID: PMC7205313  PMID: 32287268
Castro-Portuguez, R., and G. L. Sutphin, "Kynurenine pathway, NAD synthesis, and mitochondrial function: Targeting tryptophan metabolism to promote longevity and healthspan.", Exp Gerontol, vol. 132, pp. 110841, 2020 04. PMCID: PMC7053056  PMID: 31954874
Park, C. K., and N. C. Horton, "Novel insights into filament-forming enzymes.", Nat Rev Mol Cell Biol, vol. 21, issue 1, pp. 1-2, 2020 01. PMID: 31676888
Blischak, P. D., M. S. Barker, and R. N. Gutenkunst, "Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data.", Mol Biol Evol, vol. 37, issue 7, pp. 2124-2136, 2020 07 01. PMID: 32068861
Burns, J. A., R. Kerney, and S. Duhamel, "Heterotrophic Carbon Fixation in a Salamander-Alga Symbiosis.", Front Microbiol, vol. 11, pp. 1815, 2020. PMCID: PMC7417444  PMID: 32849422
Fernandes, N., and R. J Buchan, "RPS28B mRNA acts as a scaffold promoting cis-translational interaction of proteins driving P-body assembly.", Nucleic Acids Res, vol. 48, issue 11, pp. 6265-6279, 2020 06 19. PMCID: PMC7293044  PMID: 32396167
Jin, S. Chih, S. A. Lewis, S. Bakhtiari, X. Zeng, M. C. Sierant, S. Shetty, S. M. Nordlie, A. Elie, M. A. Corbett, B. Y. Norton, et al., "Mutations disrupting neuritogenesis genes confer risk for cerebral palsy.", Nat Genet, vol. 52, issue 10, pp. 1046-1056, 2020 Oct. PMID: 32989326

Pages