Publications

2021

Bakkar, N., A. Starr, B. E. Rabichow, I. Lorenzini, Z. T. McEachin, R. Kraft, M. Chaung, S. Macklin-Isquierdo, T. Wingfield, B. Carhart, et al., "The M1311V variant of ATP7A is associated with impaired trafficking and copper homeostasis in models of motor neuron disease.", Neurobiol Dis, vol. 149, pp. 105228, 2021 Feb. PMID: 33359139
Gutenkunst, R. N., "dadi.CUDA: Accelerating Population Genetics Inference with Graphics Processing Units.", Mol Biol Evol, 2021 Jan 22. PMID: 33480999
Carruthers, B. M., A. K. Garcia, A. Rivier, and B. Kacar, "Automated Laboratory Growth Assessment and Maintenance of Azotobacter vinelandii.", Curr Protoc, vol. 1, issue 3, pp. e57, 2021 Mar. PMID: 33656286
Bock, N. A., S. Charvet, J. Burns, Y. Gyaltshen, A. Rozenberg, S. Duhamel, and E. Kim, "Experimental identification and in silico prediction of bacterivory in green algae.", ISME J, 2021 Mar 02. PMID: 33649548
Adam, Z. R., A. C. Fahrenbach, S. M. Jacobson, B. Kacar, and D. Yu Zubarev, "Radiolysis generates a complex organosynthetic chemical network.", Sci Rep, vol. 11, issue 1, pp. 1743, 2021 Jan 18. PMCID: PMC7813863  PMID: 33462313
Brown, N. P., A. M. Vergara, A. B. Whelan, P. Guerra, and T. A. Bolger, "Medulloblastoma-associated mutations in the DEAD-box RNA helicase DDX3X/DED1 cause specific defects in translation.", J Biol Chem, pp. 100296, 2021 Jan 15. PMID: 33460649
Pietikäinen, L. P., T. M Rahman, K. J Hiltunen, C. L. Dieckmann, and A. J. Kastaniotis, "Genetic dissection of the mitochondrial lipoylation pathway in yeast.", BMC Biol, vol. 19, issue 1, pp. 14, 2021 Jan 25. PMCID: PMC7831266  PMID: 33487163
Bearss, J. J., S. Kr Padi, N. Singh, M. Cardo-Vila, J. H. Song, G. Mouneimne, N. Fernandes, Y. Li, M. R. Harter, J. Mc Gard, et al., "EDC3 phosphorylation regulates growth and invasion through controlling P-body formation and dynamics.", EMBO Rep, pp. e50835, 2021 Feb 15. PMID: 33586867
Goldman, A. D., and B. Kacar, "Cofactors are Remnants of Life's Origin and Early Evolution.", J Mol Evol, 2021 Feb 06. PMID: 33547911

2020

Adrion, J. R., C. B. Cole, N. Dukler, J. G. Galloway, A. L. Gladstein, G. Gower, C. C. Kyriazis, A. P. Ragsdale, G. Tsambos, F. Baumdicker, et al., "A community-maintained standard library of population genetic models.", Elife, vol. 9, 2020 06 23. PMCID: PMC7438115  PMID: 32573438
Kacar, B., A. K. Garcia, and A. D. Anbar, "Evolutionary History of Bioessential Elements Can Guide the Search for Life in the Universe.", Chembiochem, 2020 Nov 02. PMID: 33136319
Lam, A. T., J. Griffin, M. Austin Loeun, N. J. Cira, S. Ah Lee, and I. H. Riedel-Kruse, "Pac-Euglena: A Living Cellular Pac-Man Meets Virtual Ghosts", CHI: Conference on Human Factors in Computing Systems, vol. April 2020, 04/2020.
Mathey-Prevot, B., B-T. Parker, C. Im, C. Hong, P. Dong, G. Yao, and L. You, "Quantifying E2F1 protein dynamics in single cells.", Quant Biol, vol. 8, issue 1, pp. 20-30, 2020 Mar. PMCID: PMC7295171  PMID: 32542116
Park, C. K., and N. C. Horton, "Novel insights into filament-forming enzymes.", Nat Rev Mol Cell Biol, vol. 21, issue 1, pp. 1-2, 2020 01. PMID: 31676888
Blischak, P. D., M. S. Barker, and R. N. Gutenkunst, "Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data.", Mol Biol Evol, vol. 37, issue 7, pp. 2124-2136, 2020 07 01. PMID: 32068861
Burns, J. A., R. Kerney, and S. Duhamel, "Heterotrophic Carbon Fixation in a Salamander-Alga Symbiosis.", Front Microbiol, vol. 11, pp. 1815, 2020. PMCID: PMC7417444  PMID: 32849422
Fernandes, N., and R. J Buchan, "RPS28B mRNA acts as a scaffold promoting cis-translational interaction of proteins driving P-body assembly.", Nucleic Acids Res, vol. 48, issue 11, pp. 6265-6279, 2020 06 19. PMCID: PMC7293044  PMID: 32396167
Jin, S. Chih, S. A. Lewis, S. Bakhtiari, X. Zeng, M. C. Sierant, S. Shetty, S. M. Nordlie, A. Elie, M. A. Corbett, B. Y. Norton, et al., "Mutations disrupting neuritogenesis genes confer risk for cerebral palsy.", Nat Genet, vol. 52, issue 10, pp. 1046-1056, 2020 Oct. PMID: 32989326
Lim, J. T., C. Chen, A. D. Grant, and M. Padi, "Generating Ensembles of Gene Regulatory Networks to Assess Robustness of Disease Modules.", Front Genet, vol. 11, pp. 603264, 2020. PMCID: PMC7841433  PMID: 33519907
Garcia, A. K., H. McShea, B. Kolaczkowski, and B. Kacar, "Reconstructing the evolutionary history of nitrogenases: Evidence for ancestral molybdenum-cofactor utilization.", Geobiology, vol. 18, issue 3, pp. 394-411, 2020 05. PMCID: PMC7216921  PMID: 32065506
Venkataram, S., R. Monasky, S. H. Sikaroodi, S. Kryazhimskiy, and B. Kacar, "Evolutionary stalling and a limit on the power of natural selection to improve a cellular module.", Proc Natl Acad Sci U S A, vol. 117, issue 31, pp. 18582-18590, 2020 08 04. PMCID: PMC7414050  PMID: 32680961
Liu, G., A. Byrd, A. N. Warner, F. Pei, E. Basha, A. Buchanan, and R. J Buchan, "Cdc48/VCP and Endocytosis Regulate TDP-43 and FUS Toxicity and Turnover.", Mol Cell Biol, vol. 40, issue 4, 2020 01 30. PMCID: PMC6996276  PMID: 31767634
Liu, B., Y. Shen, H. Huang, K. Della Croce, M. Wu, Y. Fan, Y. Liu, J. Xu, and G. Yao, "Curcumin derivative C212 inhibits Hsp90 and eliminates both growing and quiescent leukemia cells in deep dormancy.", Cell Commun Signal, vol. 18, issue 1, pp. 159, 2020 Sep 29. PMCID: PMC7523331  PMID: 32993709
Fernandes, N., L. Nero, S. M. Lyons, P. Ivanov, T. M. Mittelmeier, T. A. Bolger, and R. J Buchan, "Stress Granule Assembly Can Facilitate but Is Not Required for TDP-43 Cytoplasmic Aggregation.", Biomolecules, vol. 10, issue 10, 2020 Sep 25. PMCID: PMC7650667  PMID: 32992901
Zarnescu, D. C., "Think globally, act locally: Centrosome-localized mRNAs ensure mitotic fidelity.", J Cell Biol, vol. 219, issue 12, 2020 Dec 07. PMCID: PMC7716381  PMID: 33216116

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