Publications

2021

Bakkar, N., A. Starr, B. E. Rabichow, I. Lorenzini, Z. T. McEachin, R. Kraft, M. Chaung, S. Macklin-Isquierdo, T. Wingfield, B. Carhart, et al., "The M1311V variant of ATP7A is associated with impaired trafficking and copper homeostasis in models of motor neuron disease.", Neurobiol Dis, vol. 149, pp. 105228, 2021 Feb. PMID: 33359139
Gutenkunst, R. N., "dadi.CUDA: Accelerating Population Genetics Inference with Graphics Processing Units.", Mol Biol Evol, 2021 Jan 22. PMID: 33480999
Garcia, A. K., C. M. Cavanaugh, and B. Kacar, "The curious consistency of carbon biosignatures over billions of years of Earth-life coevolution.", ISME J, 2021 Apr 12. PMID: 33846565
Lemke, M. D., K. E. Fisher, M. A. Kozlowska, D. W. Tano, and J. D. Woodson, "The core autophagy machinery is not required for chloroplast singlet oxygen-mediated cell death in the Arabidopsis thaliana plastid ferrochelatase two mutant.", BMC Plant Biol, vol. 21, issue 1, pp. 342, 2021 Jul 19. PMID: 34281507
Adam, Z. R., A. C. Fahrenbach, S. M. Jacobson, B. Kacar, and D. Yu Zubarev, "Radiolysis generates a complex organosynthetic chemical network.", Sci Rep, vol. 11, issue 1, pp. 1743, 2021 Jan 18. PMCID: PMC7813863  PMID: 33462313
McLaughlin, J. E., N. I. Darwish, J. Garcia-Sanchez, N. Tyagi, H. N. Trick, S. McCormick, R. Dill-Macky, and N. E. Tumer, "A Lipid Transfer Protein has Antifungal and Antioxidant Activity and Suppresses Fusarium Head Blight Disease and DON Accumulation in Transgenic Wheat.", Phytopathology, vol. 111, issue 4, pp. 671-683, 2021 Apr. PMID: 32896217
Koenig, S. N., H. C. Sucharski, E. Jose, E. K. Dudley, F. Madiai, O. Cavus, A. D. Argall, J. Williams, N. P. Murphy, C. Br Keith, et al., "Inherited Variants in SCARB1 Cause Severe Early-Onset Coronary Artery Disease.", Circ Res, 2021 May 12. PMID: 33975440
De Tarafder, A., N. Prasad Parajuli, S. Majumdar, B. Kacar, and S. Sanyal, "Kinetic Analysis Suggests Evolution of Ribosome Specificity in Modern Elongation Factor-Tus from 'Generalist' Ancestors.", Mol Biol Evol, 2021 Apr 19. PMID: 33871630
Carruthers, B. M., A. K. Garcia, A. Rivier, and B. Kacar, "Automated Laboratory Growth Assessment and Maintenance of Azotobacter vinelandii.", Curr Protoc, vol. 1, issue 3, pp. e57, 2021 Mar. PMID: 33656286
Bock, N. A., S. Charvet, J. Burns, Y. Gyaltshen, A. Rozenberg, S. Duhamel, and E. Kim, "Experimental identification and in silico prediction of bacterivory in green algae.", ISME J, 2021 Mar 02. PMID: 33649548
Loganathan, S., H. E. Ball, E. Manzo, and D. C. Zarnescu, "Measuring Glucose Uptake in Drosophila Models of TDP-43 Proteinopathy.", J Vis Exp, issue 174, 2021 Aug 03. PMID: 34424253
Goldman, A. D., and B. Kacar, "Cofactors are Remnants of Life's Origin and Early Evolution.", J Mol Evol, 2021 Feb 06. PMID: 33547911
Hirshorn, S. T., N. Steele, and Y. Zavros, "Modeling pancreatic pathophysiology using genome editing of adult stem cell-derived and induced pluripotent stem cell (iPSC)-derived organoids.", Am J Physiol Gastrointest Liver Physiol, vol. 320, issue 6, pp. G1142-G1150, 2021 Jun 01. PMID: 33759566
Blawn, K. T., K. L. Kellohen, E. A. Galloway, J. Wahl, A. Vivek, V. G. Verkhovsky, N. K. Barker, K. E. Cottier, T. G. Vallecillo, P. R. Langlais, et al., "Sex hormones regulate NHE1 functional expression and brain endothelial proteome to control paracellular integrity of the blood endothelial barrier.", Brain Res, vol. 1763, pp. 147448, 2021 Jul 15. PMID: 33771519
Ahmed, N. S., L. M. Harrell, D. R. Wieland, M. A. Lay, V. F. Thompson, and J. C. Schwartz, "Fusion protein EWS-FLI1 is incorporated into a protein granule in cells.", RNA, 2021 May 25. PMID: 34035145
Brown, N. P., A. M. Vergara, A. B. Whelan, P. Guerra, and T. A. Bolger, "Medulloblastoma-associated mutations in the DEAD-box RNA helicase DDX3X/DED1 cause specific defects in translation.", J Biol Chem, pp. 100296, 2021 Jan 15. PMID: 33460649
Lehmkuhl, E. M., S. Loganathan, E. Alsop, A. D. Blythe, T. Kovalik, N. P. Mortimore, D. Barrameda, C. Kueth, R. J. Eck, B. B. Siddegowda, et al., "TDP-43 proteinopathy alters the ribosome association of multiple mRNAs including the glypican Dally-like protein (Dlp)/GPC6.", Acta Neuropathol Commun, vol. 9, issue 1, pp. 52, 2021 03 24. PMCID: PMC7992842  PMID: 33762006
Pietikäinen, L. P., T. M Rahman, K. J Hiltunen, C. L. Dieckmann, and A. J. Kastaniotis, "Genetic dissection of the mitochondrial lipoylation pathway in yeast.", BMC Biol, vol. 19, issue 1, pp. 14, 2021 Jan 25. PMCID: PMC7831266  PMID: 33487163
Bearss, J. J., S. Kr Padi, N. Singh, M. Cardo-Vila, J. H. Song, G. Mouneimne, N. Fernandes, Y. Li, M. R. Harter, J. Mc Gard, et al., "EDC3 phosphorylation regulates growth and invasion through controlling P-body formation and dynamics.", EMBO Rep, pp. e50835, 2021 Feb 15. PMID: 33586867
Baltrus, D., M. Clark, K. Hockett, M. Mollico, C. Smith, and S. Weaver, "Prophylactic Application of Tailocins Prevents Infection by Pseudomonas syringae.", Phytopathology, 2021 Jul 28. PMID: 34320833

2020

Adrion, J. R., C. B. Cole, N. Dukler, J. G. Galloway, A. L. Gladstein, G. Gower, C. C. Kyriazis, A. P. Ragsdale, G. Tsambos, F. Baumdicker, et al., "A community-maintained standard library of population genetic models.", Elife, vol. 9, 2020 06 23. PMCID: PMC7438115  PMID: 32573438
Teal, E., M. Dua-Awereh, S. T. Hirshorn, and Y. Zavros, "Role of metaplasia during gastric regeneration.", Am J Physiol Cell Physiol, vol. 319, issue 6, pp. C947-C954, 2020 12 01. PMCID: PMC7792674  PMID: 32755448
Kacar, B., A. K. Garcia, and A. D. Anbar, "Evolutionary History of Bioessential Elements Can Guide the Search for Life in the Universe.", Chembiochem, 2020 Nov 02. PMID: 33136319
Oh, M-H., S. H. Honey, and F. E. Tax, "The Control of Cell Expansion, Cell Division, and Vascular Development by Brassinosteroids: A Historical Perspective.", Int J Mol Sci, vol. 21, issue 5, 2020 Mar 04. PMCID: PMC7084555  PMID: 32143305
Lam, A. T., J. Griffin, M. Austin Loeun, N. J. Cira, S. Ah Lee, and I. H. Riedel-Kruse, "Pac-Euglena: A Living Cellular Pac-Man Meets Virtual Ghosts", CHI: Conference on Human Factors in Computing Systems, vol. April 2020, 04/2020.

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