Publications

2010

Horton, N. C., and C. K. Park, "Crystallization of zinc finger proteins bound to DNA.", Methods Mol Biol, vol. 649, pp. 457-77, 2010. PMID: 20680852
Lee, T. J., G. Yao, D. C. Bennett, J. R. Nevins, and L. You, "Stochastic E2F activation and reconciliation of phenomenological cell-cycle models.", PLoS Biol, vol. 8, issue 9, 2010 Sep 21. PMCID: PMC2943438  PMID: 20877711
Alcázar-Román, A. R., T. A. Bolger, and S. R. Wente, "Control of mRNA export and translation termination by inositol hexakisphosphate requires specific interaction with Gle1.", J Biol Chem, vol. 285, issue 22, pp. 16683-92, 2010 May 28. PMCID: PMC2878036  PMID: 20371601
Park, C. K., A. P. Stiteler, S. Shah, I. M Ghare, J. Bitinaite, and N. C. Horton, "Activation of DNA cleavage by oligomerization of DNA-bound SgrAI.", Biochemistry, vol. 49, issue 41, pp. 8818-30, 2010 Oct 19. PMCID: PMC2972665  PMID: 20836535
Colvin, J., M. I. Monine, R. N. Gutenkunst, W. S. Hlavacek, D. D. Von Hoff, and R. G. Posner, "RuleMonkey: software for stochastic simulation of rule-based models.", BMC Bioinformatics, vol. 11, pp. 404, 2010 Jul 30. PMCID: PMC2921409  PMID: 20673321
Louderbough, J. M. V., J. I. Lopez, and J. A. Schroeder, "Matrix hyaluronan alters epidermal growth factor receptor-dependent cell morphology.", Cell Adh Migr, vol. 4, issue 1, pp. 26-31, 2010 Jan-Mar. PMCID: PMC2852554  PMID: 20009574
Flowers, M., J. A. Schroeder, A. D. Borowsky, D. G. Besselsen, C. A. Thomson, R. Pandey, and P. A. Thompson, "Pilot study on the effects of dietary conjugated linoleic acid on tumorigenesis and gene expression in PyMT transgenic mice.", Carcinogenesis, vol. 31, issue 9, pp. 1642-9, 2010 Sep. PMCID: PMC2930807  PMID: 20624750

2009

Andrés, A. M., M. J. Hubisz, A. Indap, D. G. Torgerson, J. D. Degenhardt, A. R. Boyko, R. N. Gutenkunst, T. J. White, E. D. Green, C. D. Bustamante, et al., "Targets of balancing selection in the human genome.", Mol Biol Evol, vol. 26, issue 12, pp. 2755-64, 2009 Dec. PMCID: PMC2782326  PMID: 19713326
Cheung, L. Siu Lun, X. Zheng, A. Stopa, J. C. Baygents, R. Guzman, J. A. Schroeder, R. L. Heimark, and Y. Zohar, "Detachment of captured cancer cells under flow acceleration in a bio-functionalized microchannel.", Lab Chip, vol. 9, issue 12, pp. 1721-31, 2009 Jun 21. PMID: 19495456
Sutphin, G. L., and M. Kaeberlein, "Measuring Caenorhabditis elegans life span on solid media.", J Vis Exp, issue 27, 2009 May 12. PMCID: PMC2794294  PMID: 19488025
Gutenkunst, R. N., R. D. Hernandez, S. H. Williamson, and C. D. Bustamante, "Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data.", PLoS Genet, vol. 5, issue 10, pp. e1000695, 2009 Oct. PMCID: PMC2760211  PMID: 19851460
Bitler, B. G., I. Menzl, C. L. Huerta, B. Sands, W. Knowlton, A. Chang, and J. A. Schroeder, "Intracellular MUC1 peptides inhibit cancer progression.", Clin Cancer Res, vol. 15, issue 1, pp. 100-9, 2009 Jan 01. PMCID: PMC2676873  PMID: 19118037
Mehta, R., K. A. Steinkraus, G. L. Sutphin, F. J. Ramos, L. S. Shamieh, A. Huh, C. Davis, D. Chandler-Brown, and M. Kaeberlein, "Proteasomal regulation of the hypoxic response modulates aging in C. elegans.", Science, vol. 324, issue 5931, pp. 1196-8, 2009 May 29. PMCID: PMC2737476  PMID: 19372390
Nielsen, R., M. J. Hubisz, I. Hellmann, D. Torgerson, A. M. Andrés, A. Albrechtsen, R. Gutenkunst, M. D. Adams, M. Cargill, A. Boyko, et al., "Darwinian and demographic forces affecting human protein coding genes.", Genome Res, vol. 19, issue 5, pp. 838-49, 2009 May. PMCID: PMC2675972  PMID: 19279335
J Buchan, R., and R. Parker, "Eukaryotic stress granules: the ins and outs of translation.", Mol Cell, vol. 36, issue 6, pp. 932-41, 2009 Dec 25. PMCID: PMC2813218  PMID: 20064460
Mori, S., J. T. Chang, E. R. Andrechek, N. Matsumura, T. Baba, G. Yao, J. W. Kim, M. Gatza, S. Murphy, and J. R. Nevins, "Anchorage-independent cell growth signature identifies tumors with metastatic potential.", Oncogene, vol. 28, issue 31, pp. 2796-805, 2009 Aug 06. PMCID: PMC3008357  PMID: 19483725
Dunten, P. W., E. J. Little, and N. C. Horton, "The restriction enzyme SgrAI: structure solution via combination of poor MIRAS and MR phases.", Acta Crystallogr D Biol Crystallogr, vol. 65, issue Pt 4, pp. 393-8, 2009 Apr. PMCID: PMC2659886  PMID: 19307723
Auton, A., K. Bryc, A. R. Boyko, K. E. Lohmueller, J. Novembre, A. Reynolds, A. Indap, M. H. Wright, J. D. Degenhardt, R. N. Gutenkunst, et al., "Global distribution of genomic diversity underscores rich complex history of continental human populations.", Genome Res, vol. 19, issue 5, pp. 795-803, 2009 May. PMCID: PMC2675968  PMID: 19218534

2008

J Buchan, R., D. Muhlrad, and R. Parker, "P bodies promote stress granule assembly in Saccharomyces cerevisiae.", J Cell Biol, vol. 183, issue 3, pp. 441-55, 2008 Nov 03. PMCID: PMC2575786  PMID: 18981231
Mori, S., R. E. Rempel, J. T. Chang, G. Yao, A. S. Lagoo, A. Potti, A. Bild, and J. R. Nevins, "Utilization of pathway signatures to reveal distinct types of B lymphoma in the Emicro-myc model and human diffuse large B-cell lymphoma.", Cancer Res, vol. 68, issue 20, pp. 8525-34, 2008 Oct 15. PMCID: PMC3617051  PMID: 18922927
Casey, F. P., J. J. Waterfall, R. N. Gutenkunst, C. R. Myers, and J. P. Sethna, "Variational method for estimating the rate of convergence of Markov-chain Monte Carlo algorithms.", Phys Rev E Stat Nonlin Soft Matter Phys, vol. 78, issue 4 Pt 2, pp. 046704, 2008 Oct. PMID: 18999558
Yao, G., T. Jun Lee, S. Mori, J. R. Nevins, and L. You, "A bistable Rb-E2F switch underlies the restriction point.", Nat Cell Biol, vol. 10, issue 4, pp. 476-82, 2008 Apr. PMID: 18364697
Sutphin, G. L., and M. Kaeberlein, "Dietary restriction by bacterial deprivation increases life span in wild-derived nematodes.", Exp Gerontol, vol. 43, issue 3, pp. 130-5, 2008 Mar. PMID: 18083317
Daniels, B. C., Y-J. Chen, J. P. Sethna, R. N. Gutenkunst, and C. R. Myers, "Sloppiness, robustness, and evolvability in systems biology.", Curr Opin Biotechnol, vol. 19, issue 4, pp. 389-95, 2008 Aug. PMID: 18620054
Lee, T., G. Yao, J. Nevins, and L. You, "Sensing and integration of Erk and PI3K signals by Myc.", PLoS Comput Biol, vol. 4, issue 2, pp. e1000013, 2008 Feb 29. PMCID: PMC2265471  PMID: 18463697

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