Publications

2013

Delaney, J. R., U. Ahmed, A. Chou, S. Sim, D. Carr, C. J. Murakami, J. Schleit, G. L. Sutphin, E. H. An, A. Castanza, et al., "Stress profiling of longevity mutants identifies Afg3 as a mitochondrial determinant of cytoplasmic mRNA translation and aging.", Aging Cell, vol. 12, issue 1, pp. 156-66, 2013 Feb. PMCID: PMC3687586  PMID: 23167605
Lyumkis, D., H. Talley, A. Stewart, S. Shah, C. K. Park, F. Tama, C. S. Potter, B. Carragher, and N. C. Horton, "Allosteric regulation of DNA cleavage and sequence-specificity through run-on oligomerization.", Structure, vol. 21, issue 10, pp. 1848-58, 2013 Oct 08. PMCID: PMC3898938  PMID: 24055317

2012

Sutphin, G. L., B. A. Olsen, B. K. Kennedy, and M. Kaeberlein, "Genome-wide analysis of yeast aging.", Subcell Biochem, vol. 57, pp. 251-89, 2012. PMID: 22094426
Buchan, J.R., A. P. Capaldi, and R. Parker, "TOR-tured yeast find a new way to stand the heat.", Mol Cell, vol. 47, issue 2, pp. 155-7, 2012 Jul 27. PMID: 22841000
Horm, T. M., B. G. Bitler, D. M. Broka, J. M. Louderbough, and J. A. Schroeder, "MUC1 drives c-Met-dependent migration and scattering.", Mol Cancer Res, vol. 10, issue 12, pp. 1544-54, 2012 Dec. PMCID: PMC3528822  PMID: 23193156
Maggert, K. A., "Genetics: polymorphisms, epigenetics, and something in between.", Genet Res Int, vol. 2012, pp. 867951, 2012. PMCID: PMC3335516  PMID: 22567405
Murakami, C., J. R. Delaney, A. Chou, D. Carr, J. Schleit, G. L. Sutphin, E. H. An, A. S. Castanza, M. Fletcher, S. Goswami, et al., "pH neutralization protects against reduction in replicative lifespan following chronological aging in yeast.", Cell Cycle, vol. 11, issue 16, pp. 3087-96, 2012 Aug 15. PMCID: PMC3442919  PMID: 22871733
Russ, A., J. M. V. Louderbough, D. Zarnescu, and J. A. Schroeder, "Hugl1 and Hugl2 in mammary epithelial cells: polarity, proliferation, and differentiation.", PLoS One, vol. 7, issue 10, pp. e47734, 2012. PMCID: PMC3479147  PMID: 23110097
Sutphin, G. L., E. Bishop, M. E. Yanos, R. M. Moller, and M. Kaeberlein, "Caffeine extends life span, improves healthspan, and delays age-associated pathology in Caenorhabditis elegans.", Longev Healthspan, vol. 1, pp. 9, 2012. PMCID: PMC3922918  PMID: 24764514

2011

Gutenkunst, R. N., D. Coombs, T. Starr, M. L. Dustin, and B. Goldstein, "A biophysical model of cell adhesion mediated by immunoadhesin drugs and antibodies.", PLoS One, vol. 6, issue 5, pp. e19701, 2011. PMCID: PMC3100730  PMID: 21629715
Chylek, L. A., B. Hu, M. L. Blinov, T. Emonet, J. R. Faeder, B. Goldstein, R. N. Gutenkunst, J. M. Haugh, T. Lipniacki, R. G. Posner, et al., "Guidelines for visualizing and annotating rule-based models.", Mol Biosyst, vol. 7, issue 10, pp. 2779-95, 2011 Oct. PMCID: PMC3168731  PMID: 21647530
Wong, J. V., G. Yao, J. R. Nevins, and L. You, "Viral-mediated noisy gene expression reveals biphasic E2f1 response to MYC.", Mol Cell, vol. 41, issue 3, pp. 275-85, 2011 Feb 04. PMCID: PMC3044932  PMID: 21292160
Zheng, X., L. Siu- Lun Cheung, J. A. Schroeder, L. Jiang, and Y. Zohar, "Cell receptor and surface ligand density effects on dynamic states of adhering circulating tumor cells.", Lab Chip, vol. 11, issue 20, pp. 3431-9, 2011 Oct 21. PMCID: PMC6765388  PMID: 21853194
Kruegel, U., B. Robison, T. Dange, G. Kahlert, J. R. Delaney, S. Kotireddy, M. Tsuchiya, S. Tsuchiyama, C. J. Murakami, J. Schleit, et al., "Elevated proteasome capacity extends replicative lifespan in Saccharomyces cerevisiae.", PLoS Genet, vol. 7, issue 9, pp. e1002253, 2011 Sep. PMCID: PMC3169524  PMID: 21931558
Aldy, K. N., N. C. Horton, P. A. Mathew, and S. O. Mathew, "2B4+ CD8+ T cells play an inhibitory role against constrained HIV epitopes.", Biochem Biophys Res Commun, vol. 405, issue 3, pp. 503-7, 2011 Feb 18. PMCID: PMC3063451  PMID: 21256826
Buchan, J.R., J-H. Yoon, and R. Parker, "Stress-specific composition, assembly and kinetics of stress granules in Saccharomyces cerevisiae.", J Cell Sci, vol. 124, issue Pt 2, pp. 228-39, 2011 Jan 15. PMCID: PMC3010191  PMID: 21172806
Locke, D. P., LD. W. Hillier, W. C. Warren, K. C. Worley, L. V. Nazareth, D. M. Muzny, S-P. Yang, Z. Wang, A. T. Chinwalla, P. Minx, et al., "Comparative and demographic analysis of orang-utan genomes.", Nature, vol. 469, issue 7331, pp. 529-33, 2011 Jan 27. PMCID: PMC3060778  PMID: 21270892
Burnett, C., S. Valentini, F. Cabreiro, M. Goss, M. Somogyvári, M. D. Piper, M. Hoddinott, G. L. Sutphin, V. Leko, J. J. McElwee, et al., "Absence of effects of Sir2 overexpression on lifespan in C. elegans and Drosophila.", Nature, vol. 477, issue 7365, pp. 482-5, 2011 Sep 21. PMCID: PMC3188402  PMID: 21938067
Little, E. J., P. W. Dunten, J. Bitinaite, and N. C. Horton, "New clues in the allosteric activation of DNA cleavage by SgrAI: structures of SgrAI bound to cleaved primary-site DNA and uncleaved secondary-site DNA.", Acta Crystallogr D Biol Crystallogr, vol. 67, issue Pt 1, pp. 67-74, 2011 Jan. PMCID: PMC3016018  PMID: 21206063
Skar, H., R. N. Gutenkunst, K. Wilbe Ramsay, A. Alaeus, J. Albert, and T. Leitner, "Daily sampling of an HIV-1 patient with slowly progressing disease displays persistence of multiple env subpopulations consistent with neutrality.", PLoS One, vol. 6, issue 8, pp. e21747, 2011. PMCID: PMC3149046  PMID: 21829600
Wong, J. V., G. Yao, J. R. Nevins, and L. You, "Using noisy gene expression mediated by engineered adenovirus to probe signaling dynamics in mammalian cells.", Methods Enzymol, vol. 497, pp. 221-37, 2011. PMID: 21601089
Zheng, X., L. Siu- Lun Cheung, J. A. Schroeder, L. Jiang, and Y. Zohar, "A high-performance microsystem for isolating circulating tumor cells.", Lab Chip, vol. 11, issue 19, pp. 3269-76, 2011 Oct 07. PMCID: PMC6765387  PMID: 21837324
Bolger, T. A., and S. R. Wente, "Gle1 is a multifunctional DEAD-box protein regulator that modulates Ded1 in translation initiation.", J Biol Chem, vol. 286, issue 46, pp. 39750-9, 2011 Nov 18. PMCID: PMC3220593  PMID: 21949122
Paredes, S., A. T. Branco, D. L. Hartl, K. A. Maggert, and B. Lemos, "Ribosomal DNA deletions modulate genome-wide gene expression: "rDNA-sensitive" genes and natural variation.", PLoS Genet, vol. 7, issue 4, pp. e1001376, 2011 Apr. PMCID: PMC3080856  PMID: 21533076
Delaney, J. R., G. L. Sutphin, B. Dulken, S. Sim, J. R. Kim, B. Robison, J. Schleit, C. J. Murakami, D. Carr, E. H. An, et al., "Sir2 deletion prevents lifespan extension in 32 long-lived mutants.", Aging Cell, vol. 10, issue 6, pp. 1089-91, 2011 Dec. PMCID: PMC3215821  PMID: 21902802

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