Publications
2013
Ma, X., J. L. Kelley, K. Eilertson, S. Musharoff, J. D. Degenhardt, A. L. Martins, T. Vinar, C. Kosiol, A. Siepel, R. N. Gutenkunst, et al., "Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii).", PLoS One, vol. 8, issue 10, pp. e77175, 2013.
PMCID: PMC3806739 PMID: 24194868
Chen, C., J. Li, G. Yao, S. K. Chambers, and W. Zheng, "Tubal origin of ovarian low-grade serous carcinoma.", Am J Clin Exp Obstet Gynecol, vol. 1, issue 1, pp. 13-36, 2013 Dec 15.
PMCID: PMC4205570 PMID: 25346935
2012
Sutphin, G. L., E. Bishop, M. E. Yanos, R. M. Moller, and M. Kaeberlein, "Caffeine extends life span, improves healthspan, and delays age-associated pathology in Caenorhabditis elegans.", Longev Healthspan, vol. 1, pp. 9, 2012.
PMCID: PMC3922918 PMID: 24764514
Russ, A., J. M. V. Louderbough, D. Zarnescu, and J. A. Schroeder, "Hugl1 and Hugl2 in mammary epithelial cells: polarity, proliferation, and differentiation.", PLoS One, vol. 7, issue 10, pp. e47734, 2012.
PMCID: PMC3479147 PMID: 23110097
Sutphin, G. L., B. A. Olsen, B. K. Kennedy, and M. Kaeberlein, "Genome-wide analysis of yeast aging.", Subcell Biochem, vol. 57, pp. 251-89, 2012.
PMID: 22094426
Buchan, J.R., A. P. Capaldi, and R. Parker, "TOR-tured yeast find a new way to stand the heat.", Mol Cell, vol. 47, issue 2, pp. 155-7, 2012 Jul 27.
PMID: 22841000
Maggert, K. A., "Genetics: polymorphisms, epigenetics, and something in between.", Genet Res Int, vol. 2012, pp. 867951, 2012.
PMCID: PMC3335516 PMID: 22567405
Murakami, C., J. R. Delaney, A. Chou, D. Carr, J. Schleit, G. L. Sutphin, E. H. An, A. S. Castanza, M. Fletcher, S. Goswami, et al., "pH neutralization protects against reduction in replicative lifespan following chronological aging in yeast.", Cell Cycle, vol. 11, issue 16, pp. 3087-96, 2012 Aug 15.
PMCID: PMC3442919 PMID: 22871733
Horm, T. M., B. G. Bitler, D. M. Broka, J. M. Louderbough, and J. A. Schroeder, "MUC1 drives c-Met-dependent migration and scattering.", Mol Cancer Res, vol. 10, issue 12, pp. 1544-54, 2012 Dec.
PMCID: PMC3528822 PMID: 23193156
2011
Buchan, J.R., J-H. Yoon, and R. Parker, "Stress-specific composition, assembly and kinetics of stress granules in Saccharomyces cerevisiae.", J Cell Sci, vol. 124, issue Pt 2, pp. 228-39, 2011 Jan 15.
PMCID: PMC3010191 PMID: 21172806
Paredes, S., A. T. Branco, D. L. Hartl, K. A. Maggert, and B. Lemos, "Ribosomal DNA deletions modulate genome-wide gene expression: "rDNA-sensitive" genes and natural variation.", PLoS Genet, vol. 7, issue 4, pp. e1001376, 2011 Apr.
PMCID: PMC3080856 PMID: 21533076
Locke, D. P., LD. W. Hillier, W. C. Warren, K. C. Worley, L. V. Nazareth, D. M. Muzny, S-P. Yang, Z. Wang, A. T. Chinwalla, P. Minx, et al., "Comparative and demographic analysis of orang-utan genomes.", Nature, vol. 469, issue 7331, pp. 529-33, 2011 Jan 27.
PMCID: PMC3060778 PMID: 21270892
Skar, H., R. N. Gutenkunst, K. Wilbe Ramsay, A. Alaeus, J. Albert, and T. Leitner, "Daily sampling of an HIV-1 patient with slowly progressing disease displays persistence of multiple env subpopulations consistent with neutrality.", PLoS One, vol. 6, issue 8, pp. e21747, 2011.
PMCID: PMC3149046 PMID: 21829600
Zheng, X., L. Siu- Lun Cheung, J. A. Schroeder, L. Jiang, and Y. Zohar, "A high-performance microsystem for isolating circulating tumor cells.", Lab Chip, vol. 11, issue 19, pp. 3269-76, 2011 Oct 07.
PMCID: PMC6765387 PMID: 21837324
Delaney, J. R., G. L. Sutphin, B. Dulken, S. Sim, J. R. Kim, B. Robison, J. Schleit, C. J. Murakami, D. Carr, E. H. An, et al., "Sir2 deletion prevents lifespan extension in 32 long-lived mutants.", Aging Cell, vol. 10, issue 6, pp. 1089-91, 2011 Dec.
PMCID: PMC3215821 PMID: 21902802
Yao, G., C. Tan, M. West, J. R. Nevins, and L. You, "Origin of bistability underlying mammalian cell cycle entry.", Mol Syst Biol, vol. 7, pp. 485, 2011 Apr 26.
PMCID: PMC3101952 PMID: 21525871
Gravel, S., B. M. Henn, R. N. Gutenkunst, A. R. Indap, G. T. Marth, A. G. Clark, F. Yu, R. A. Gibbs, and C. D. Bustamante, "Demographic history and rare allele sharing among human populations.", Proc Natl Acad Sci U S A, vol. 108, issue 29, pp. 11983-8, 2011 Jul 19.
PMCID: PMC3142009 PMID: 21730125
Louderbough, J. M. V., J. A. Brown, R. B. Nagle, and J. A. Schroeder, "CD44 Promotes Epithelial Mammary Gland Development and Exhibits Altered Localization during Cancer Progression.", Genes Cancer, vol. 2, issue 8, pp. 771-81, 2011 Aug.
PMCID: PMC3278897 PMID: 22393462
Xu, X., X. Liu, S. Ge, J. D. Jensen, F. Hu, X. Li, Y. Dong, R. N. Gutenkunst, L. Fang, L. Huang, et al., "Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes.", Nat Biotechnol, vol. 30, issue 1, pp. 105-11, 2011 Dec 11.
PMID: 22158310
Louderbough, J. M. V., and J. A. Schroeder, "Understanding the dual nature of CD44 in breast cancer progression.", Mol Cancer Res, vol. 9, issue 12, pp. 1573-86, 2011 Dec.
PMID: 21970856
Wong, J. V., G. Yao, J. R. Nevins, and L. You, "Viral-mediated noisy gene expression reveals biphasic E2f1 response to MYC.", Mol Cell, vol. 41, issue 3, pp. 275-85, 2011 Feb 04.
PMCID: PMC3044932 PMID: 21292160
Kruegel, U., B. Robison, T. Dange, G. Kahlert, J. R. Delaney, S. Kotireddy, M. Tsuchiya, S. Tsuchiyama, C. J. Murakami, J. Schleit, et al., "Elevated proteasome capacity extends replicative lifespan in Saccharomyces cerevisiae.", PLoS Genet, vol. 7, issue 9, pp. e1002253, 2011 Sep.
PMCID: PMC3169524 PMID: 21931558
Gutenkunst, R. N., D. Coombs, T. Starr, M. L. Dustin, and B. Goldstein, "A biophysical model of cell adhesion mediated by immunoadhesin drugs and antibodies.", PLoS One, vol. 6, issue 5, pp. e19701, 2011.
PMCID: PMC3100730 PMID: 21629715
Chylek, L. A., B. Hu, M. L. Blinov, T. Emonet, J. R. Faeder, B. Goldstein, R. N. Gutenkunst, J. M. Haugh, T. Lipniacki, R. G. Posner, et al., "Guidelines for visualizing and annotating rule-based models.", Mol Biosyst, vol. 7, issue 10, pp. 2779-95, 2011 Oct.
PMCID: PMC3168731 PMID: 21647530
Zheng, X., L. Siu- Lun Cheung, J. A. Schroeder, L. Jiang, and Y. Zohar, "Cell receptor and surface ligand density effects on dynamic states of adhering circulating tumor cells.", Lab Chip, vol. 11, issue 20, pp. 3431-9, 2011 Oct 21.
PMCID: PMC6765388 PMID: 21853194