Publications

2017

Lynch, M., R. Gutenkunst, M. Ackerman, K. Spitze, Z. Ye, T. Maruki, and Z. Jia, "Population Genomics of .", Genetics, vol. 206, issue 1, pp. 315-332, 2017 05. PMCID: PMC5419477  PMID: 27932545
Liu, G., C. Lanham, R. J Buchan, and M. E. Kaplan, "High-throughput transformation of Saccharomyces cerevisiae using liquid handling robots.", PLoS One, vol. 12, issue 3, pp. e0174128, 2017. PMCID: PMC5358765  PMID: 28319150
Hsieh, PH., B. Hallmark, J. Watkins, T. M. Karafet, L. P. Osipova, R. N. Gutenkunst, and M. F. Hammer, "Exome Sequencing Provides Evidence of Polygenic Adaptation to a Fat-Rich Animal Diet in Indigenous Siberian Populations.", Mol Biol Evol, vol. 34, issue 11, pp. 2913-2926, 2017 Nov 01. PMID: 28962010
Wang, X., K. Fujimaki, G. C. Mitchell, J. Sarah Kwon, K. Della Croce, C. Langsdorf, H. Helen Zhang, and G. Yao, "Exit from quiescence displays a memory of cell growth and division.", Nat Commun, vol. 8, issue 1, pp. 321, 2017 08 22. PMCID: PMC5567331  PMID: 28831039
Miller, H., M. Fletcher, M. Primitivo, A. Leonard, G. L. Sutphin, N. Rintala, M. Kaeberlein, and S. F. Leiser, "Genetic interaction with temperature is an important determinant of nematode longevity.", Aging Cell, vol. 16, issue 6, pp. 1425-1429, 2017 12. PMCID: PMC5676069  PMID: 28940623
Kacar, B., L. Guy, E. Smith, and J. Baross, "Resurrecting ancestral genes in bacteria to interpret ancient biosignatures.", Philos Trans A Math Phys Eng Sci, vol. 375, issue 2109, 2017 Dec 28. PMCID: PMC5686408  PMID: 29133450
Liu, G., F. Pei, F. Yang, L. Li, A. Dipak Amin, S. Liu, R. J Buchan, and W. C. Cho, "Role of Autophagy and Apoptosis in Non-Small-Cell Lung Cancer.", Int J Mol Sci, vol. 18, issue 2, 2017 Feb 10. PMCID: PMC5343902  PMID: 28208579
Auman, T., B. M. I. Vreede, A. Weiss, S. D. Hester, T. A. Williams, L. M. Nagy, and A. D. Chipman, "Dynamics of growth zone patterning in the milkweed bug Oncopeltus fasciatus.", Development, vol. 144, issue 10, pp. 1896-1905, 2017 May 15. PMCID: PMC5450833  PMID: 28432218
Qi, X., H. An, A. P. Ragsdale, T. E. Hall, R. N. Gutenkunst, C. J Pires, and M. S. Barker, "Genomic inferences of domestication events are corroborated by written records in Brassica rapa.", Mol Ecol, vol. 26, issue 13, pp. 3373-3388, 2017 Jul. PMID: 28371014
Shats, I., M. Deng, A. Davidovich, C. Zhang, J. S. Kwon, D. Manandhar, R. Gordân, G. Yao, and L. You, "Expression level is a key determinant of E2F1-mediated cell fate.", Cell Death Differ, vol. 24, issue 4, pp. 626-637, 2017 04. PMCID: PMC5384025  PMID: 28211871
Sutphin, G. L., G. Backer, S. Sheehan, S. Bean, C. Corban, T. Liu, M. J. Peters, J. B. J. van Meurs, J. M. Murabito, A. D. Johnson, et al., "Caenorhabditis elegans orthologs of human genes differentially expressed with age are enriched for determinants of longevity.", Aging Cell, vol. 16, issue 4, pp. 672-682, 2017 08. PMCID: PMC5506438  PMID: 28401650
Williams, T. A., and L. M. Nagy, "Linking gene regulation to cell behaviors in the posterior growth zone of sequentially segmenting arthropods.", Arthropod Struct Dev, vol. 46, issue 3, pp. 380-394, 2017 May. PMID: 27720841
Ragsdale, A. P., and R. N. Gutenkunst, "Inferring Demographic History Using Two-Locus Statistics.", Genetics, vol. 206, issue 2, pp. 1037-1048, 2017 06. PMCID: PMC5499162  PMID: 28413158
Garcia, A. K., W. J Schopf, S-I. Yokobori, S. Akanuma, and A. Yamagishi, "Reconstructed ancestral enzymes suggest long-term cooling of Earth's photic zone since the Archean.", Proc Natl Acad Sci U S A, vol. 114, issue 18, pp. 4619-4624, 2017 05 02. PMCID: PMC5422769  PMID: 28416654
Liu, G., A. N. Coyne, F. Pei, S. Vaughan, M. Chaung, D. C. Zarnescu, and R. J Buchan, "Endocytosis regulates TDP-43 toxicity and turnover.", Nat Commun, vol. 8, issue 1, pp. 2092, 2017 12 12. PMCID: PMC5727062  PMID: 29233983
Aryanpur, P. P., C. A. Regan, J. M. Collins, T. M. Mittelmeier, D. M. Renner, A. M. Vergara, N. P. Brown, and T. A. Bolger, "Gle1 Regulates RNA Binding of the DEAD-Box Helicase Ded1 in Its Complex Role in Translation Initiation.", Mol Cell Biol, vol. 37, issue 21, 2017 Nov 01. PMCID: PMC5640818  PMID: 28784717

2016

Hsieh, PH., K. R. Veeramah, J. Lachance, S. A. Tishkoff, J. D. Wall, M. F. Hammer, and R. N. Gutenkunst, "Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection.", Genome Res, vol. 26, issue 3, pp. 279-90, 2016 Mar. PMCID: PMC4772011  PMID: 26888263
Constantinou, S. J., R. M. Pace, A. J. Stangl, L. M. Nagy, and T. A. Williams, "Wnt repertoire and developmental expression patterns in the crustacean Thamnocephalus platyurus.", Evol Dev, vol. 18, issue 5-6, pp. 324-341, 2016 Dec. PMID: 27696666
Sutphin, G. L., M. J Mahoney, K. Sheppard, D. O. Walton, and R. Korstanje, "WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning.", PLoS Comput Biol, vol. 12, issue 11, pp. e1005182, 2016 Nov. PMCID: PMC5094675  PMID: 27812085
Chen, C., P. Li, Y. Li, G. Yao, and J-H. Xu, "Antitumor effects and mechanisms of extracts and spores oil.", Oncol Lett, vol. 12, issue 5, pp. 3571-3578, 2016 Nov. PMCID: PMC5104053  PMID: 27900038
Greenwood, E., S. Maisel, D. Ebertz, A. Russ, R. Pandey, and J. Schroeder, "Llgl1 prevents metaplastic survival driven by epidermal growth factor dependent migration.", Oncotarget, vol. 7, issue 38, pp. 60776-60792, 2016 Sep 20. PMCID: PMC5308616  PMID: 27542214
Coffman, A. J., P. Hsun Hsieh, S. Gravel, and R. N. Gutenkunst, "Computationally Efficient Composite Likelihood Statistics for Demographic Inference.", Mol Biol Evol, vol. 33, issue 2, pp. 591-3, 2016 Feb. PMCID: PMC5854098  PMID: 26545922
Nagy, L., T. Heikkinen, A. Sackeyfio, and R. Pitman, "The Clinical Impact and Cost Effectiveness of Quadrivalent Versus Trivalent Influenza Vaccination in Finland.", Pharmacoeconomics, vol. 34, issue 9, pp. 939-51, 2016 Sep. PMCID: PMC4980401  PMID: 27423657
Mannakee, B. K., and R. N. Gutenkunst, "Selection on Network Dynamics Drives Differential Rates of Protein Domain Evolution.", PLoS Genet, vol. 12, issue 7, pp. e1006132, 2016 07. PMCID: PMC4933380  PMID: 27380265
Leiser, S. F., G. Jafari, M. Primitivo, G. L. Sutphin, J. Dong, A. Leonard, M. Fletcher, and M. Kaeberlein, "Age-associated vulval integrity is an important marker of nematode healthspan.", Age (Dordr), vol. 38, issue 5-6, pp. 419-431, 2016 Dec. PMCID: PMC5266215  PMID: 27566309

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