Publications

2017

Qi, X., H. An, A. P. Ragsdale, T. E. Hall, R. N. Gutenkunst, C. J Pires, and M. S. Barker, "Genomic inferences of domestication events are corroborated by written records in Brassica rapa.", Mol Ecol, vol. 26, issue 13, pp. 3373-3388, 2017 Jul. PMID: 28371014
Dai, J., M. A. Miller, N. J. Everetts, X. Wang, P. Li, Y. Li, J-H. Xu, and G. Yao, "Elimination of quiescent slow-cycling cells via reducing quiescence depth by natural compounds purified from Ganoderma lucidum.", Oncotarget, vol. 8, issue 8, pp. 13770-13781, 2017 Feb 21. PMCID: PMC5355137  PMID: 28099150
Mendenhall, A., M. M. Crane, S. Leiser, G. Sutphin, P. M. Tedesco, M. Kaeberlein, T. E. Johnson, and R. Brent, "Environmental Canalization of Life Span and Gene Expression in Caenorhabditis elegans.", J Gerontol A Biol Sci Med Sci, vol. 72, issue 8, pp. 1033-1037, 2017 Aug 01. PMCID: PMC5861850  PMID: 28369388
Kwon, J. Sarah, N. J. Everetts, X. Wang, W. Wang, K. Della Croce, J. Xing, and G. Yao, "Controlling Depth of Cellular Quiescence by an Rb-E2F Network Switch.", Cell Rep, vol. 20, issue 13, pp. 3223-3235, 2017 Sep 26. PMCID: PMC6571029  PMID: 28954237
Williams, T. A., and L. M. Nagy, "Linking gene regulation to cell behaviors in the posterior growth zone of sequentially segmenting arthropods.", Arthropod Struct Dev, vol. 46, issue 3, pp. 380-394, 2017 May. PMID: 27720841
Ragsdale, A. P., and R. N. Gutenkunst, "Inferring Demographic History Using Two-Locus Statistics.", Genetics, vol. 206, issue 2, pp. 1037-1048, 2017 06. PMCID: PMC5499162  PMID: 28413158
Garcia, A. K., W. J Schopf, S-I. Yokobori, S. Akanuma, and A. Yamagishi, "Reconstructed ancestral enzymes suggest long-term cooling of Earth's photic zone since the Archean.", Proc Natl Acad Sci U S A, vol. 114, issue 18, pp. 4619-4624, 2017 05 02. PMCID: PMC5422769  PMID: 28416654
Liu, G., A. N. Coyne, F. Pei, S. Vaughan, M. Chaung, D. C. Zarnescu, and J.R. Buchan, "Endocytosis regulates TDP-43 toxicity and turnover.", Nat Commun, vol. 8, issue 1, pp. 2092, 2017 12 12. PMCID: PMC5727062  PMID: 29233983
Miller, H., M. Fletcher, M. Primitivo, A. Leonard, G. L. Sutphin, N. Rintala, M. Kaeberlein, and S. F. Leiser, "Genetic interaction with temperature is an important determinant of nematode longevity.", Aging Cell, vol. 16, issue 6, pp. 1425-1429, 2017 12. PMCID: PMC5676069  PMID: 28940623
Wang, X., K. Fujimaki, G. C. Mitchell, J. Sarah Kwon, K. Della Croce, C. Langsdorf, H. Helen Zhang, and G. Yao, "Exit from quiescence displays a memory of cell growth and division.", Nat Commun, vol. 8, issue 1, pp. 321, 2017 08 22. PMCID: PMC5567331  PMID: 28831039
Lynch, M., R. Gutenkunst, M. Ackerman, K. Spitze, Z. Ye, T. Maruki, and Z. Jia, "Population Genomics of .", Genetics, vol. 206, issue 1, pp. 315-332, 2017 05. PMCID: PMC5419477  PMID: 27932545
Liu, G., C. Lanham, J.R. Buchan, and M. E. Kaplan, "High-throughput transformation of Saccharomyces cerevisiae using liquid handling robots.", PLoS One, vol. 12, issue 3, pp. e0174128, 2017. PMCID: PMC5358765  PMID: 28319150
Hsieh, PH., B. Hallmark, J. Watkins, T. M. Karafet, L. P. Osipova, R. N. Gutenkunst, and M. F. Hammer, "Exome Sequencing Provides Evidence of Polygenic Adaptation to a Fat-Rich Animal Diet in Indigenous Siberian Populations.", Mol Biol Evol, vol. 34, issue 11, pp. 2913-2926, 2017 Nov 01. PMID: 28962010
Shats, I., M. Deng, A. Davidovich, C. Zhang, J. S. Kwon, D. Manandhar, R. Gordân, G. Yao, and L. You, "Expression level is a key determinant of E2F1-mediated cell fate.", Cell Death Differ, vol. 24, issue 4, pp. 626-637, 2017 04. PMCID: PMC5384025  PMID: 28211871
Sutphin, G. L., G. Backer, S. Sheehan, S. Bean, C. Corban, T. Liu, M. J. Peters, J. B. J. van Meurs, J. M. Murabito, A. D. Johnson, et al., "Caenorhabditis elegans orthologs of human genes differentially expressed with age are enriched for determinants of longevity.", Aging Cell, vol. 16, issue 4, pp. 672-682, 2017 08. PMCID: PMC5506438  PMID: 28401650
Aryanpur, P. P., C. A. Regan, J. M. Collins, T. M. Mittelmeier, D. M. Renner, A. M. Vergara, N. P. Brown, and T. A. Bolger, "Gle1 Regulates RNA Binding of the DEAD-Box Helicase Ded1 in Its Complex Role in Translation Initiation.", Mol Cell Biol, vol. 37, issue 21, 2017 Nov 01. PMCID: PMC5640818  PMID: 28784717
Kacar, B., L. Guy, E. Smith, and J. Baross, "Resurrecting ancestral genes in bacteria to interpret ancient biosignatures.", Philos Trans A Math Phys Eng Sci, vol. 375, issue 2109, 2017 Dec 28. PMCID: PMC5686408  PMID: 29133450

2016

Sutphin, G. L., M. J Mahoney, K. Sheppard, D. O. Walton, and R. Korstanje, "WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning.", PLoS Comput Biol, vol. 12, issue 11, pp. e1005182, 2016 Nov. PMCID: PMC5094675  PMID: 27812085
Buehler, J., S. Zeltzer, J. Reitsma, A. Petrucelli, M. Umashankar, M. Rak, P. Zagallo, J. Schroeder, S. Terhune, and F. Goodrum, "Opposing Regulation of the EGF Receptor: A Molecular Switch Controlling Cytomegalovirus Latency and Replication.", PLoS Pathog, vol. 12, issue 5, pp. e1005655, 2016 05. PMCID: PMC4878804  PMID: 27218650
Edwards, T., M. Tollis, PH. Hsieh, R. N. Gutenkunst, Z. Liu, K. Kusumi, M. Culver, and R. W. Murphy, "Assessing models of speciation under different biogeographic scenarios; an empirical study using multi-locus and RNA-seq analyses.", Ecol Evol, vol. 6, issue 2, pp. 379-96, 2016 01. PMCID: PMC4729248  PMID: 26843925
Pace, R. M., M. Grbić, and L. M. Nagy, "Composition and genomic organization of arthropod Hox clusters.", Evodevo, vol. 7, pp. 11, 2016. PMCID: PMC4862073  PMID: 27168931
Ragsdale, A. P., A. J. Coffman, PH. Hsieh, T. J. Struck, and R. N. Gutenkunst, "Triallelic Population Genomics for Inferring Correlated Fitness Effects of Same Site Nonsynonymous Mutations.", Genetics, vol. 203, issue 1, pp. 513-23, 2016 05. PMCID: PMC4858796  PMID: 27029732
Eshleman, N., G. Liu, K. McGrath, R. Parker, and J.R. Buchan, "Defects in THO/TREX-2 function cause accumulation of novel cytoplasmic mRNP granules that can be cleared by autophagy.", RNA, vol. 22, issue 8, pp. 1200-14, 2016 08. PMCID: PMC4931113  PMID: 27251550
Chen, C., P. Li, Y. Li, G. Yao, and J-H. Xu, "Antitumor effects and mechanisms of extracts and spores oil.", Oncol Lett, vol. 12, issue 5, pp. 3571-3578, 2016 Nov. PMCID: PMC5104053  PMID: 27900038
Leiser, S. F., G. Jafari, M. Primitivo, G. L. Sutphin, J. Dong, A. Leonard, M. Fletcher, and M. Kaeberlein, "Age-associated vulval integrity is an important marker of nematode healthspan.", Age (Dordr), vol. 38, issue 5-6, pp. 419-431, 2016 Dec. PMCID: PMC5266215  PMID: 27566309

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