Publications

2019

Fujimaki, K., R. Li, H. Chen, K. Della Croce, H. Helen Zhang, J. Xing, F. Bai, and G. Yao, "Graded regulation of cellular quiescence depth between proliferation and senescence by a lysosomal dimmer switch.", Proc Natl Acad Sci U S A, vol. 116, issue 45, pp. 22624-22634, 2019 11 05. PMCID: PMC6842626  PMID: 31636214
Maisel, S. A., D. Broka, B. Atwell, T. Bunch, R. Kupp, S. K. Singh, S. Mehta, and J. Schroeder, "Stapled EGFR peptide reduces inflammatory breast cancer and inhibits additional HER-driven models of cancer.", J Transl Med, vol. 17, issue 1, pp. 201, 2019 06 18. PMCID: PMC6582486  PMID: 31215437
Park, C. K., and N. C. Horton, "Structures, functions, and mechanisms of filament forming enzymes: a renaissance of enzyme filamentation.", Biophys Rev, vol. 11, issue 6, pp. 927-994, 2019 Dec. PMCID: PMC6874960  PMID: 31734826
Tian, X., X. Tu, K. Della Croce, G. Yao, H. Cai, N. Brock, S. Pau, and R. Liang, "Multi-wavelength quantitative polarization and phase microscope.", Biomed Opt Express, vol. 10, issue 4, pp. 1638-1648, 2019 Apr 01. PMCID: PMC6484989  PMID: 31061760
Aryanpur, P. P., D. M. Renner, E. Rodela, T. M. Mittelmeier, A. Byrd, and T. A. Bolger, "The DEAD-box RNA helicase Ded1 has a role in the translational response to TORC1 inhibition.", Mol Biol Cell, vol. 30, issue 17, pp. 2171-2184, 2019 08 01. PMCID: PMC6743465  PMID: 31141444
Barahona, C. J., E. L Basantes, K. J. Tompkins, D. M. Heitman, B. I. Chukwu, J. Sanchez, J. L. Sanchez, N. Ghadirian, C. K. Park, and N. C. Horton, "The Need for Speed: Run-On Oligomer Filament Formation Provides Maximum Speed with Maximum Sequestration of Activity.", J Virol, vol. 93, issue 5, 2019 03 01. PMCID: PMC6384071  PMID: 30518649
Bubier, J. A., G. L. Sutphin, T. J. Reynolds, R. Korstanje, A. Fuksman-Kumpa, E. J. Baker, M. A. Langston, and E. J. Chesler, "Integration of heterogeneous functional genomics data in gerontology research to find genes and pathway underlying aging across species.", PLoS One, vol. 14, issue 4, pp. e0214523, 2019. PMCID: PMC6461221  PMID: 30978202
Polley, S., D. Lyumkis, and N. C. Horton, "Mechanism of Filamentation-Induced Allosteric Activation of the SgrAI Endonuclease.", Structure, vol. 27, issue 10, pp. 1497-1507.e3, 2019 10 01. PMCID: PMC6774820  PMID: 31447289
Garcia, A. K., and B. Kacar, "How to resurrect ancestral proteins as proxies for ancient biogeochemistry.", Free Radic Biol Med, vol. 140, pp. 260-269, 2019 08 20. PMID: 30951835
Zhang, J., H. Chen, R. Li, D. A. Taft, G. Yao, F. Bai, and J. Xing, "Spatial clustering and common regulatory elements correlate with coordinated gene expression.", PLoS Comput Biol, vol. 15, issue 3, pp. e1006786, 2019 03. PMCID: PMC6415868  PMID: 30822341
Xu, P., S. S. Ganaie, X. Wang, Z. Wang, S. Kleiboeker, N. C. Horton, R. F. Heier, M. J. Meyers, J. E. Tavis, and J. Qiu, "Endonuclease Activity Inhibition of the NS1 Protein of Parvovirus B19 as a Novel Target for Antiviral Drug Development.", Antimicrob Agents Chemother, vol. 63, issue 3, 2019 03. PMCID: PMC6395930  PMID: 30530599

2018

Z, F. A. Adam, K. B, and A. M, "Prebiotic Geochemical Automata at the Intersection of Radiolytic Chemistry, Physical Complexity, and Systems Biology", Complexity, vol. Volume 2018, 2018.
Mannakee, B. K., U. Balaji, A. K. Witkiewicz, R. N. Gutenkunst, and E. S. Knudsen, "Sensitive and specific post-call filtering of genetic variants in xenograft and primary tumors.", Bioinformatics, vol. 34, issue 10, pp. 1713-1718, 2018 05 15. PMCID: PMC5946891  PMID: 29325072
Maisel, S., D. Broka, and J. Schroeder, "Intravesicular epidermal growth factor receptor subject to retrograde trafficking drives epidermal growth factor-dependent migration.", Oncotarget, vol. 9, issue 5, pp. 6463-6477, 2018 Jan 19. PMCID: PMC5814225  PMID: 29464085
Park, C. K., J. L. Sanchez, C. Barahona, E. L Basantes, J. Sanchez, C. Hernandez, and N. C. Horton, "The run-on oligomer filament enzyme mechanism of SgrAI: Part 2. Kinetic modeling of the full DNA cleavage pathway.", J Biol Chem, vol. 293, issue 38, pp. 14599-14615, 2018 09 21. PMCID: PMC6153286  PMID: 30054273
Walker, S. I., W. Bains, L. Cronin, S. DasSarma, S. Danielache, S. Domagal-Goldman, B. Kacar, N. Y. Kiang, A. Lenardic, C. T. Reinhard, et al., "Exoplanet Biosignatures: Future Directions.", Astrobiology, vol. 18, issue 6, pp. 779-824, 2018 06. PMCID: PMC6016573  PMID: 29938538
Fujimaki, K., and G. Yao, "Crack the state of silence: Tune the depth of cellular quiescence for cancer therapy.", Mol Cell Oncol, vol. 5, issue 1, pp. e1403531, 2018. PMCID: PMC5791855  PMID: 29404395
Das, A., S. Datta, E. Roche, S. Chaffee, E. Jose, L. Shi, K. Grover, S. Khanna, C. K. Sen, and S. Roy, "Novel mechanisms of Collagenase Santyl Ointment (CSO) in wound macrophage polarization and resolution of wound inflammation.", Sci Rep, vol. 8, issue 1, pp. 1696, 2018 01 26. PMCID: PMC5786052  PMID: 29374192
Kwon, J. Sarah, X. Wang, and G. Yao, "Study Quiescence Heterogeneity by Coupling Single-Cell Measurements and Computer Modeling.", Methods Mol Biol, vol. 1686, pp. 287-299, 2018. PMID: 29030828
Fernandes, N., N. Eshleman, and R. J Buchan, "Stress Granules and ALS: A Case of Causation or Correlation?", Adv Neurobiol, vol. 20, pp. 173-212, 2018. PMID: 29916020
Struck, T. J., B. K. Mannakee, and R. N. Gutenkunst, "The impact of genome-wide association studies on biomedical research publications.", Hum Genomics, vol. 12, issue 1, pp. 38, 2018 08 13. PMCID: PMC6090631  PMID: 30103832
Daniel, S. G., A. D. Russ, K. M. Guthridge, A. I. Raina, P. S. Estes, L. M. Parsons, H. E. Richardson, J. A. Schroeder, and D. C. Zarnescu, "mediates the role of Lethal giant larvae as an epithelial growth inhibitor in .", Biol Open, vol. 7, issue 1, 2018 Jan 26. PMCID: PMC5829493  PMID: 29361610

2017

Dai, J., M. A. Miller, N. J. Everetts, X. Wang, P. Li, Y. Li, J-H. Xu, and G. Yao, "Elimination of quiescent slow-cycling cells via reducing quiescence depth by natural compounds purified from Ganoderma lucidum.", Oncotarget, vol. 8, issue 8, pp. 13770-13781, 2017 Feb 21. PMCID: PMC5355137  PMID: 28099150
Ragsdale, A. P., and R. N. Gutenkunst, "Inferring Demographic History Using Two-Locus Statistics.", Genetics, vol. 206, issue 2, pp. 1037-1048, 2017 06. PMCID: PMC5499162  PMID: 28413158
Mendenhall, A., M. M. Crane, S. Leiser, G. Sutphin, P. M. Tedesco, M. Kaeberlein, T. E. Johnson, and R. Brent, "Environmental Canalization of Life Span and Gene Expression in Caenorhabditis elegans.", J Gerontol A Biol Sci Med Sci, vol. 72, issue 8, pp. 1033-1037, 2017 Aug 01. PMCID: PMC5861850  PMID: 28369388

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