Publications
2016
Mannakee, B. K., and R. N. Gutenkunst, "Selection on Network Dynamics Drives Differential Rates of Protein Domain Evolution.", PLoS Genet, vol. 12, issue 7, pp. e1006132, 2016 07.
PMCID: PMC4933380 PMID: 27380265
Buehler, J., S. Zeltzer, J. Reitsma, A. Petrucelli, M. Umashankar, M. Rak, P. Zagallo, J. Schroeder, S. Terhune, and F. Goodrum, "Opposing Regulation of the EGF Receptor: A Molecular Switch Controlling Cytomegalovirus Latency and Replication.", PLoS Pathog, vol. 12, issue 5, pp. e1005655, 2016 05.
PMCID: PMC4878804 PMID: 27218650
Edwards, T., M. Tollis, PH. Hsieh, R. N. Gutenkunst, Z. Liu, K. Kusumi, M. Culver, and R. W. Murphy, "Assessing models of speciation under different biogeographic scenarios; an empirical study using multi-locus and RNA-seq analyses.", Ecol Evol, vol. 6, issue 2, pp. 379-96, 2016 01.
PMCID: PMC4729248 PMID: 26843925
Pace, R. M., M. Grbić, and L. M. Nagy, "Composition and genomic organization of arthropod Hox clusters.", Evodevo, vol. 7, pp. 11, 2016.
PMCID: PMC4862073 PMID: 27168931
Ragsdale, A. P., A. J. Coffman, PH. Hsieh, T. J. Struck, and R. N. Gutenkunst, "Triallelic Population Genomics for Inferring Correlated Fitness Effects of Same Site Nonsynonymous Mutations.", Genetics, vol. 203, issue 1, pp. 513-23, 2016 05.
PMCID: PMC4858796 PMID: 27029732
Eshleman, N., G. Liu, K. McGrath, R. Parker, and J.R. Buchan, "Defects in THO/TREX-2 function cause accumulation of novel cytoplasmic mRNP granules that can be cleared by autophagy.", RNA, vol. 22, issue 8, pp. 1200-14, 2016 08.
PMCID: PMC4931113 PMID: 27251550
Sutphin, G. L., M. J Mahoney, K. Sheppard, D. O. Walton, and R. Korstanje, "WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning.", PLoS Comput Biol, vol. 12, issue 11, pp. e1005182, 2016 Nov.
PMCID: PMC5094675 PMID: 27812085
Sanchez, J. L., Z. Romero, A. Quinones, K. R. Torgeson, and N. C. Horton, "DNA Binding and Cleavage by the Human Parvovirus B19 NS1 Nuclease Domain.", Biochemistry, vol. 55, issue 47, pp. 6577-6593, 2016 Nov 29.
PMCID: PMC5933076 PMID: 27809499
Hsieh, PH., K. R. Veeramah, J. Lachance, S. A. Tishkoff, J. D. Wall, M. F. Hammer, and R. N. Gutenkunst, "Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection.", Genome Res, vol. 26, issue 3, pp. 279-90, 2016 Mar.
PMCID: PMC4772011 PMID: 26888263
Chen, C., P. Li, Y. Li, G. Yao, and J-H. Xu, "Antitumor effects and mechanisms of extracts and spores oil.", Oncol Lett, vol. 12, issue 5, pp. 3571-3578, 2016 Nov.
PMCID: PMC5104053 PMID: 27900038
Constantinou, S. J., R. M. Pace, A. J. Stangl, L. M. Nagy, and T. A. Williams, "Wnt repertoire and developmental expression patterns in the crustacean Thamnocephalus platyurus.", Evol Dev, vol. 18, issue 5-6, pp. 324-341, 2016 Dec.
PMID: 27696666
Leiser, S. F., G. Jafari, M. Primitivo, G. L. Sutphin, J. Dong, A. Leonard, M. Fletcher, and M. Kaeberlein, "Age-associated vulval integrity is an important marker of nematode healthspan.", Age (Dordr), vol. 38, issue 5-6, pp. 419-431, 2016 Dec.
PMCID: PMC5266215 PMID: 27566309
2015
Chandler-Brown, D., H. Choi, S. Park, B. R. Ocampo, S. Chen, A. Le, G. L. Sutphin, L. S. Shamieh, E. D. Smith, and M. Kaeberlein, "Sorbitol treatment extends lifespan and induces the osmotic stress response in Caenorhabditis elegans.", Front Genet, vol. 6, pp. 316, 2015.
PMCID: PMC4621483 PMID: 26579191
Pandya, S., T. J. Struck, B. K. Mannakee, M. Paniscus, and R. N. Gutenkunst, "Testing whether metazoan tyrosine loss was driven by selection against promiscuous phosphorylation.", Mol Biol Evol, vol. 32, issue 1, pp. 144-52, 2015 Jan.
PMCID: PMC4271526 PMID: 25312910
Vermulst, M., A. S. Denney, M. J. Lang, C-W. Hung, S. Moore, A. M Moseley, A. M. Mosely, W. J Thompson, W. J. Thompson, V. Madden, et al., "Transcription errors induce proteotoxic stress and shorten cellular lifespan.", Nat Commun, vol. 6, pp. 8065, 2015 Aug 25.
PMCID: PMC4684168 PMID: 26304740
Shah, S., J. Sanchez, A. Stewart, M. M. Piperakis, R. Cosstick, C. Nichols, C. K. Park, X. Ma, V. Wysocki, J. Bitinaite, et al., "Probing the run-on oligomer of activated SgrAI bound to DNA.", PLoS One, vol. 10, issue 4, pp. e0124783, 2015.
PMCID: PMC4399878 PMID: 25880668
Zhang, W., L. Wei, L. Li, B. Yang, B. Kong, G. Yao, and W. Zheng, "Ovarian serous carcinogenesis from tubal secretory cells.", Histol Histopathol, vol. 30, issue 11, pp. 1295-302, 2015 Nov.
PMID: 26174492
McCormick, M. A., J. R. Delaney, M. Tsuchiya, S. Tsuchiyama, A. Shemorry, S. Sim, A. Chia- Zong Chou, U. Ahmed, D. Carr, C. J. Murakami, et al., "A Comprehensive Analysis of Replicative Lifespan in 4,698 Single-Gene Deletion Strains Uncovers Conserved Mechanisms of Aging.", Cell Metab, vol. 22, issue 5, pp. 895-906, 2015 Nov 03.
PMCID: PMC4862740 PMID: 26456335
Horton, N. C., and P. A. Mathew, "NKp44 and Natural Cytotoxicity Receptors as Damage-Associated Molecular Pattern Recognition Receptors.", Front Immunol, vol. 6, pp. 31, 2015.
PMCID: PMC4313717 PMID: 25699048
Vermulst, M., A. S. Denney, M. J. Lang, C-W. Hung, S. Moore, A. M Moseley, W. J Thompson, V. Madden, J. Gauer, K. J. Wolfe, et al., "Corrigendum: Transcription errors induce proteotoxic stress and shorten cellular lifespan.", Nat Commun, vol. 6, pp. 8738, 2015 Oct 14.
PMID: 26465398
Shah, S., P. Dunten, A. Stiteler, C. K. Park, and N. C. Horton, "Structure and specificity of FEN-1 from Methanopyrus kandleri.", Proteins, vol. 83, issue 1, pp. 188-94, 2015 Jan.
PMCID: PMC4270939 PMID: 25354467
Deans, C., and K. A. Maggert, "What do you mean, "epigenetic"?", Genetics, vol. 199, issue 4, pp. 887-96, 2015 Apr.
PMCID: PMC4391566 PMID: 25855649
Peters, M. J., R. Joehanes, L. C. Pilling, C. Schurmann, K. N. Conneely, J. Powell, E. Reinmaa, G. L. Sutphin, A. Zhernakova, K. Schramm, et al., "The transcriptional landscape of age in human peripheral blood.", Nat Commun, vol. 6, pp. 8570, 2015 Oct 22.
PMCID: PMC4639797 PMID: 26490707
Hermansen, R. A., B. K. Mannakee, W. Knecht, D. A. Liberles, and R. N. Gutenkunst, "Characterizing selective pressures on the pathway for de novo biosynthesis of pyrimidines in yeast.", BMC Evol Biol, vol. 15, pp. 232, 2015 Oct 28.
PMCID: PMC4625875 PMID: 26511837
Aldrich, J. C., and K. A. Maggert, "Transgenerational inheritance of diet-induced genome rearrangements in Drosophila.", PLoS Genet, vol. 11, issue 4, pp. e1005148, 2015 Apr.
PMCID: PMC4401788 PMID: 25885886