Publications

2016

Nagy, L., T. Heikkinen, A. Sackeyfio, and R. Pitman, "The Clinical Impact and Cost Effectiveness of Quadrivalent Versus Trivalent Influenza Vaccination in Finland.", Pharmacoeconomics, vol. 34, issue 9, pp. 939-51, 2016 Sep. PMCID: PMC4980401  PMID: 27423657
Mannakee, B. K., and R. N. Gutenkunst, "Selection on Network Dynamics Drives Differential Rates of Protein Domain Evolution.", PLoS Genet, vol. 12, issue 7, pp. e1006132, 2016 07. PMCID: PMC4933380  PMID: 27380265
Buehler, J., S. Zeltzer, J. Reitsma, A. Petrucelli, M. Umashankar, M. Rak, P. Zagallo, J. Schroeder, S. Terhune, and F. Goodrum, "Opposing Regulation of the EGF Receptor: A Molecular Switch Controlling Cytomegalovirus Latency and Replication.", PLoS Pathog, vol. 12, issue 5, pp. e1005655, 2016 05. PMCID: PMC4878804  PMID: 27218650
Glass, D. S., X. Jin, and I. H. Riedel-Kruse, "Nonlinear delay differential equations and their application to modeling biological network motifs", BMC Neurosci, vol. 17 Suppl 1, pp. 54, 2016 08 18. PMCID: PMC5001212  PMID: 27534393
Edwards, T., M. Tollis, PH. Hsieh, R. N. Gutenkunst, Z. Liu, K. Kusumi, M. Culver, and R. W. Murphy, "Assessing models of speciation under different biogeographic scenarios; an empirical study using multi-locus and RNA-seq analyses.", Ecol Evol, vol. 6, issue 2, pp. 379-96, 2016 01. PMCID: PMC4729248  PMID: 26843925
Pace, R. M., M. Grbić, and L. M. Nagy, "Composition and genomic organization of arthropod Hox clusters.", Evodevo, vol. 7, pp. 11, 2016. PMCID: PMC4862073  PMID: 27168931
Ragsdale, A. P., A. J. Coffman, PH. Hsieh, T. J. Struck, and R. N. Gutenkunst, "Triallelic Population Genomics for Inferring Correlated Fitness Effects of Same Site Nonsynonymous Mutations.", Genetics, vol. 203, issue 1, pp. 513-23, 2016 05. PMCID: PMC4858796  PMID: 27029732
Eshleman, N., G. Liu, K. McGrath, R. Parker, and J.R. Buchan, "Defects in THO/TREX-2 function cause accumulation of novel cytoplasmic mRNP granules that can be cleared by autophagy.", RNA, vol. 22, issue 8, pp. 1200-14, 2016 08. PMCID: PMC4931113  PMID: 27251550
Sanchez, J. L., Z. Romero, A. Quinones, K. R. Torgeson, and N. C. Horton, "DNA Binding and Cleavage by the Human Parvovirus B19 NS1 Nuclease Domain.", Biochemistry, vol. 55, issue 47, pp. 6577-6593, 2016 Nov 29. PMCID: PMC5933076  PMID: 27809499
Hsieh, PH., K. R. Veeramah, J. Lachance, S. A. Tishkoff, J. D. Wall, M. F. Hammer, and R. N. Gutenkunst, "Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection.", Genome Res, vol. 26, issue 3, pp. 279-90, 2016 Mar. PMCID: PMC4772011  PMID: 26888263
Sutphin, G. L., M. J Mahoney, K. Sheppard, D. O. Walton, and R. Korstanje, "WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning.", PLoS Comput Biol, vol. 12, issue 11, pp. e1005182, 2016 Nov. PMCID: PMC5094675  PMID: 27812085
Constantinou, S. J., R. M. Pace, A. J. Stangl, L. M. Nagy, and T. A. Williams, "Wnt repertoire and developmental expression patterns in the crustacean Thamnocephalus platyurus.", Evol Dev, vol. 18, issue 5-6, pp. 324-341, 2016 Dec. PMID: 27696666

2015

Pandya, S., T. J. Struck, B. K. Mannakee, M. Paniscus, and R. N. Gutenkunst, "Testing whether metazoan tyrosine loss was driven by selection against promiscuous phosphorylation.", Mol Biol Evol, vol. 32, issue 1, pp. 144-52, 2015 Jan. PMCID: PMC4271526  PMID: 25312910
Aldrich, J. C., and K. A. Maggert, "Transgenerational inheritance of diet-induced genome rearrangements in Drosophila.", PLoS Genet, vol. 11, issue 4, pp. e1005148, 2015 Apr. PMCID: PMC4401788  PMID: 25885886
Shah, S., J. Sanchez, A. Stewart, M. M. Piperakis, R. Cosstick, C. Nichols, C. K. Park, X. Ma, V. Wysocki, J. Bitinaite, et al., "Probing the run-on oligomer of activated SgrAI bound to DNA.", PLoS One, vol. 10, issue 4, pp. e0124783, 2015. PMCID: PMC4399878  PMID: 25880668
Chandler-Brown, D., H. Choi, S. Park, B. R. Ocampo, S. Chen, A. Le, G. L. Sutphin, L. S. Shamieh, E. D. Smith, and M. Kaeberlein, "Sorbitol treatment extends lifespan and induces the osmotic stress response in Caenorhabditis elegans.", Front Genet, vol. 6, pp. 316, 2015. PMCID: PMC4621483  PMID: 26579191
Vermulst, M., A. S. Denney, M. J. Lang, C-W. Hung, S. Moore, A. M Moseley, A. M. Mosely, W. J Thompson, W. J. Thompson, V. Madden, et al., "Transcription errors induce proteotoxic stress and shorten cellular lifespan.", Nat Commun, vol. 6, pp. 8065, 2015 Aug 25. PMCID: PMC4684168  PMID: 26304740
Horton, N. C., and P. A. Mathew, "NKp44 and Natural Cytotoxicity Receptors as Damage-Associated Molecular Pattern Recognition Receptors.", Front Immunol, vol. 6, pp. 31, 2015. PMCID: PMC4313717  PMID: 25699048
Zhang, W., L. Wei, L. Li, B. Yang, B. Kong, G. Yao, and W. Zheng, "Ovarian serous carcinogenesis from tubal secretory cells.", Histol Histopathol, vol. 30, issue 11, pp. 1295-302, 2015 Nov. PMID: 26174492
Shah, S., P. Dunten, A. Stiteler, C. K. Park, and N. C. Horton, "Structure and specificity of FEN-1 from Methanopyrus kandleri.", Proteins, vol. 83, issue 1, pp. 188-94, 2015 Jan. PMCID: PMC4270939  PMID: 25354467
McCormick, M. A., J. R. Delaney, M. Tsuchiya, S. Tsuchiyama, A. Shemorry, S. Sim, A. Chia- Zong Chou, U. Ahmed, D. Carr, C. J. Murakami, et al., "A Comprehensive Analysis of Replicative Lifespan in 4,698 Single-Gene Deletion Strains Uncovers Conserved Mechanisms of Aging.", Cell Metab, vol. 22, issue 5, pp. 895-906, 2015 Nov 03. PMCID: PMC4862740  PMID: 26456335
Vermulst, M., A. S. Denney, M. J. Lang, C-W. Hung, S. Moore, A. M Moseley, W. J Thompson, V. Madden, J. Gauer, K. J. Wolfe, et al., "Corrigendum: Transcription errors induce proteotoxic stress and shorten cellular lifespan.", Nat Commun, vol. 6, pp. 8738, 2015 Oct 14. PMID: 26465398
Hermansen, R. A., B. K. Mannakee, W. Knecht, D. A. Liberles, and R. N. Gutenkunst, "Characterizing selective pressures on the pathway for de novo biosynthesis of pyrimidines in yeast.", BMC Evol Biol, vol. 15, pp. 232, 2015 Oct 28. PMCID: PMC4625875  PMID: 26511837
Deans, C., and K. A. Maggert, "What do you mean, "epigenetic"?", Genetics, vol. 199, issue 4, pp. 887-96, 2015 Apr. PMCID: PMC4391566  PMID: 25855649
Peters, M. J., R. Joehanes, L. C. Pilling, C. Schurmann, K. N. Conneely, J. Powell, E. Reinmaa, G. L. Sutphin, A. Zhernakova, K. Schramm, et al., "The transcriptional landscape of age in human peripheral blood.", Nat Commun, vol. 6, pp. 8570, 2015 Oct 22. PMCID: PMC4639797  PMID: 26490707

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