Publications

2021

Carruthers, B. M., A. K. Garcia, A. Rivier, and B. Kacar, "Automated Laboratory Growth Assessment and Maintenance of Azotobacter vinelandii.", Curr Protoc, vol. 1, issue 3, pp. e57, 2021 Mar. PMID: 33656286
Bock, N. A., S. Charvet, J. Burns, Y. Gyaltshen, A. Rozenberg, S. Duhamel, and E. Kim, "Experimental identification and in silico prediction of bacterivory in green algae.", ISME J, 2021 Mar 02. PMID: 33649548
Loganathan, S., H. E. Ball, E. Manzo, and D. C. Zarnescu, "Measuring Glucose Uptake in Drosophila Models of TDP-43 Proteinopathy.", J Vis Exp, issue 174, 2021 Aug 03. PMID: 34424253
Goldman, A. D., and B. Kacar, "Cofactors are Remnants of Life's Origin and Early Evolution.", J Mol Evol, 2021 Feb 06. PMID: 33547911
Hirshorn, S. T., N. Steele, and Y. Zavros, "Modeling pancreatic pathophysiology using genome editing of adult stem cell-derived and induced pluripotent stem cell (iPSC)-derived organoids.", Am J Physiol Gastrointest Liver Physiol, vol. 320, issue 6, pp. G1142-G1150, 2021 Jun 01. PMID: 33759566
Blawn, K. T., K. L. Kellohen, E. A. Galloway, J. Wahl, A. Vivek, V. G. Verkhovsky, N. K. Barker, K. E. Cottier, T. G. Vallecillo, P. R. Langlais, et al., "Sex hormones regulate NHE1 functional expression and brain endothelial proteome to control paracellular integrity of the blood endothelial barrier.", Brain Res, vol. 1763, pp. 147448, 2021 Jul 15. PMID: 33771519
Snider, J. M., J. Karen You, X. Wang, A. J. Snider, B. Hallmark, M. M. Zec, M. C. Seeds, S. Sergeant, L. Johnstone, Q. Wang, et al., "Group IIA secreted phospholipase A2 is associated with the pathobiology leading to COVID-19 mortality.", J Clin Invest, vol. 131, issue 19, 2021 Oct 01. PMCID: PMC8483752  PMID: 34428181
Blischak, P. D., M. S. Barker, and R. N. Gutenkunst, "Chromosome-scale inference of hybrid speciation and admixture with convolutional neural networks.", Mol Ecol Resour, vol. 21, issue 8, pp. 2676-2688, 2021 Nov. PMCID: PMC8675098  PMID: 33682305
Ahmed, N. S., L. M. Harrell, D. R. Wieland, M. A. Lay, V. F. Thompson, and J. C. Schwartz, "Fusion protein EWS-FLI1 is incorporated into a protein granule in cells.", RNA, 2021 May 25. PMID: 34035145
Brown, N. P., A. M. Vergara, A. B. Whelan, P. Guerra, and T. A. Bolger, "Medulloblastoma-associated mutations in the DEAD-box RNA helicase DDX3X/DED1 cause specific defects in translation.", J Biol Chem, pp. 100296, 2021 Jan 15. PMID: 33460649
Lehmkuhl, E. M., S. Loganathan, E. Alsop, A. D. Blythe, T. Kovalik, N. P. Mortimore, D. Barrameda, C. Kueth, R. J. Eck, B. B. Siddegowda, et al., "TDP-43 proteinopathy alters the ribosome association of multiple mRNAs including the glypican Dally-like protein (Dlp)/GPC6.", Acta Neuropathol Commun, vol. 9, issue 1, pp. 52, 2021 03 24. PMCID: PMC7992842  PMID: 33762006
Pietikäinen, L. P., T. M Rahman, K. J Hiltunen, C. L. Dieckmann, and A. J. Kastaniotis, "Genetic dissection of the mitochondrial lipoylation pathway in yeast.", BMC Biol, vol. 19, issue 1, pp. 14, 2021 Jan 25. PMCID: PMC7831266  PMID: 33487163
Bearss, J. J., S. Kr Padi, N. Singh, M. Cardo-Vila, J. H. Song, G. Mouneimne, N. Fernandes, Y. Li, M. R. Harter, J. Mc Gard, et al., "EDC3 phosphorylation regulates growth and invasion through controlling P-body formation and dynamics.", EMBO Rep, pp. e50835, 2021 Feb 15. PMID: 33586867
Baltrus, D., M. Clark, K. Hockett, M. Mollico, C. Smith, and S. Weaver, "Prophylactic Application of Tailocins Prevents Infection by Pseudomonas syringae.", Phytopathology, 2021 Jul 28. PMID: 34320833
Bakkar, N., A. Starr, B. E. Rabichow, I. Lorenzini, Z. T. McEachin, R. Kraft, M. Chaung, S. Macklin-Isquierdo, T. Wingfield, B. Carhart, et al., "The M1311V variant of ATP7A is associated with impaired trafficking and copper homeostasis in models of motor neuron disease.", Neurobiol Dis, vol. 149, pp. 105228, 2021 Feb. PMID: 33359139
Gutenkunst, R. N., "dadi.CUDA: Accelerating Population Genetics Inference with Graphics Processing Units.", Mol Biol Evol, 2021 Jan 22. PMID: 33480999
Huang, X., A. Lyn Fortier, A. J. Coffman, T. J. Struck, M. N. Irby, J. E. James, J. E. León-Burguete, A. P. Ragsdale, and R. N. Gutenkunst, "Inferring Genome-Wide Correlations of Mutation Fitness Effects between Populations.", Mol Biol Evol, vol. 38, issue 10, pp. 4588-4602, 2021 Sep 27. PMCID: PMC8476148  PMID: 34043790
Fernandes, N., and R. J Buchan, "RNAs as Regulators of Cellular Matchmaking.", Front Mol Biosci, vol. 8, pp. 634146, 2021. PMCID: PMC8062979  PMID: 33898516
Garcia, A. K., C. M. Cavanaugh, and B. Kacar, "The curious consistency of carbon biosignatures over billions of years of Earth-life coevolution.", ISME J, 2021 Apr 12. PMID: 33846565
Bolger, M. S., J. B. Osness, J. S. Gouvea, and A. C. Cooper, "Supporting Scientific Practice through Model-Based Inquiry: A Students'-Eye View of Grappling with Data, Uncertainty, and Community in a Laboratory Experience.", CBE Life Sci Educ, vol. 20, issue 4, pp. ar59, 2021 12. PMID: 34678041
Lemke, M. D., K. E. Fisher, M. A. Kozlowska, D. W. Tano, and J. D. Woodson, "The core autophagy machinery is not required for chloroplast singlet oxygen-mediated cell death in the Arabidopsis thaliana plastid ferrochelatase two mutant.", BMC Plant Biol, vol. 21, issue 1, pp. 342, 2021 Jul 19. PMID: 34281507
Adam, Z. R., A. C. Fahrenbach, S. M. Jacobson, B. Kacar, and D. Yu Zubarev, "Radiolysis generates a complex organosynthetic chemical network.", Sci Rep, vol. 11, issue 1, pp. 1743, 2021 Jan 18. PMCID: PMC7813863  PMID: 33462313

2020

Lim, J. T., C. Chen, A. D. Grant, and M. Padi, "Generating Ensembles of Gene Regulatory Networks to Assess Robustness of Disease Modules.", Front Genet, vol. 11, pp. 603264, 2020. PMCID: PMC7841433  PMID: 33519907
Gomez, K., T. G. M. Vallecillo, A. Moutal, S. Perez-Miller, R. Delgado-Lezama, R. Felix, and R. Khanna, "The role of cyclin-dependent kinase 5 in neuropathic pain.", Pain, vol. 161, issue 12, pp. 2674-2689, 2020 12. PMCID: PMC7669638  PMID: 32773603
Garcia, A. K., H. McShea, B. Kolaczkowski, and B. Kacar, "Reconstructing the evolutionary history of nitrogenases: Evidence for ancestral molybdenum-cofactor utilization.", Geobiology, vol. 18, issue 3, pp. 394-411, 2020 05. PMCID: PMC7216921  PMID: 32065506

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